Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997756.1:80797265-80799025[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0016 0.035 15.0 1.6 1 23 69 91 69 91 0.97

2 17 0.0013 0.028 15.3 2.8 1 23 99 121 99 121 0.98

3 17 2.7e-06 5.9e-05 23.7 2.3 1 23 127 149 127 149 0.98

4 17 2.2e-06 4.7e-05 24.0 0.6 1 23 155 177 155 177 0.97

5 17 5e-06 0.00011 22.8 1.9 1 23 183 205 183 205 0.98

6 17 0.001 0.022 15.6 4.4 1 23 211 233 211 233 0.98

7 17 0.0036 0.077 13.9 3.7 1 23 239 261 239 261 0.98

8 17 0.009 0.19 12.6 1.0 1 23 275 297 275 297 0.98

9 17 0.0037 0.079 13.8 1.3 1 23 303 325 303 325 0.97

10 17 0.0076 0.16 12.8 2.4 1 23 331 353 331 353 0.95

11 17 2.6e-05 0.00057 20.6 3.6 1 23 359 381 359 381 0.98

12 17 2.3e-05 0.00049 20.8 3.1 2 23 388 409 387 409 0.97

13 17 0.00036 0.0077 17.0 0.6 1 23 415 437 415 437 0.98

14 17 0.0003 0.0066 17.2 1.0 1 23 443 465 443 465 0.94

15 17 4e-05 0.00087 20.0 4.2 1 23 471 493 471 493 0.97

16 17 8.6 1.9e+02 3.2 0.2 10 21 499 510 496 511 0.89

17 17 0.00034 0.0074 17.1 0.3 1 23 560 582 560 582 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0016	0.035	15.0	1.6	1	23	69	91	69	91	0.97
2	17	0.0013	0.028	15.3	2.8	1	23	99	121	99	121	0.98
3	17	2.7e-06	5.9e-05	23.7	2.3	1	23	127	149	127	149	0.98
4	17	2.2e-06	4.7e-05	24.0	0.6	1	23	155	177	155	177	0.97
5	17	5e-06	0.00011	22.8	1.9	1	23	183	205	183	205	0.98
6	17	0.001	0.022	15.6	4.4	1	23	211	233	211	233	0.98
7	17	0.0036	0.077	13.9	3.7	1	23	239	261	239	261	0.98
8	17	0.009	0.19	12.6	1.0	1	23	275	297	275	297	0.98
9	17	0.0037	0.079	13.8	1.3	1	23	303	325	303	325	0.97
10	17	0.0076	0.16	12.8	2.4	1	23	331	353	331	353	0.95
11	17	2.6e-05	0.00057	20.6	3.6	1	23	359	381	359	381	0.98
12	17	2.3e-05	0.00049	20.8	3.1	2	23	388	409	387	409	0.97
13	17	0.00036	0.0077	17.0	0.6	1	23	415	437	415	437	0.98
14	17	0.0003	0.0066	17.2	1.0	1	23	443	465	443	465	0.94
15	17	4e-05	0.00087	20.0	4.2	1	23	471	493	471	493	0.97
16	17	8.6	1.9e+02	3.2	0.2	10	21	499	510	496	511	0.89
17	17	0.00034	0.0074	17.1	0.3	1	23	560	582	560	582	0.97

Sequence Information

Coding Sequence: ATGAACATGCCAATACCAGATCAATCTCTAATAAAAGATGAAGATATTAAAATTGAACAGCTACATACAGATATAATAATTAAAGAAGAATCTTTCATGGAAATTTTCGAAGAAATTAATCCAGTCAATACTAATTTACCAGAAGATGAAATTGGTACTGAAGAATTAATCGAACATAAACCACTTGACACTGAAGAAAACCTATTTTCATGTGATGATTGTAATGAAAAATTTAATAAGCAAGCCAGTTTGGTTCTACATAAGCATATTCATACTCTAGACCTAGACAGACCATATGTATGTGAGGTTTGTAATAAAACATTTAATTGGCATAGCAATTTTGTCCAGCATAAGAGAATGCACACTGGAGAAAAACCATTTGAATGTGATGTTTGTAATAAAAAATTTACATCGCATAGCAATTTAATTATTCACAAAAGAATTCATACCGGAGAAAAACCATTTCAATGCGATGTTTGTAATAAAAAATTTGCTAATCAAAGCAATTTAGTCCAACACAAAATCGTACACATTGACGAAAACCCGTTTTCATGTGATATCTGCAATAAAACATTTAAACGACAAAGTAGTTTTATTGGACACAAACGGGTTCACGCTGGGAAAAGGCAATTTTCGTGTGATTTTTGTAATAAAATATTCAAAAACTGTACAAATCTAGTTTTACATAAGCGTCTTCATTCCAAAAGTCCACAATACGCTTGCGATCTTTGTAAAAAATCATTTTATAAGCGAAATGATTTAGTTCTACATAAATGTACCCATACTGGAAAGAGAACGAGCTTAGAAAAAGGGGAAAAACAATTTCAATGTGATGTTTGTAATAAAATTTTTCTTCAACAAAGCATTTTAAATAAACACAAAAAAATACACACTAGAAAAAGACCATTTTCATGTGATATTTGTAATAAAAGATTTATTTGGCAAAGCCATTTAGATCAACACAAAATAATTCACACTGGAGAAAAATCATTTTCTTGTGATGTATGTAATAAAAAATTTACTTGGCAAAGTCATTTAGATCAACACAAAATTTTACACATCGAAGAAAAACCGTTTTCATGTCATATCTGTAATAAAGCATTTAAACGACAAAGCAGTTTCCTTGGACACAAACGAATTCACACTAAAAGTATGCCACTTTCGTGTGATATTTGTAATAAAAAATTTACTCATCAAAGTAAATTAGCTTCTCATAAAAGAATTCACACTGGAGAAAAACCATTTGAATGTGATGTTTGTAACAAAAAATTTAGATGGCCTCAAAATTTAGTTCAACACAAAAGAATTCACACTGGAGAAAAACCATTCCAATGTGATGTCTGTAATAAAAAATTTAATCAACAAATTAATTTAGATACACACAAAGTTTTACACATTAAAGAAAAACCGTTTTCATGTGATATCTGTAATAAAAGATTTAAACATCGAAACAGTTTAAATAGACATAAAGAGATTCACGCTCGAAAAAGGCTTTTTAGTCAGCAAAGCAGTTTAGTTCAACACAAAAGAGAAAAACCATTTCAAAATGAGGTCATAAGGAGTTTAGCTGAACATAAAAAGTGGCAGCACCTTGGTGAAAATTCTTTTCCATGTGATATTGGTGATAAAACATTTTCTGACAGTTTAATTAAACAAAACGATAATCACAGAACAGAATTTTCATGTGATGTTTGTGATAAAACTTTTACAAATGCTATTCCTTTAGCTTTACACAAACGATTTCATACAATGCTTGGCTAA
Protein Sequence: MNMPIPDQSLIKDEDIKIEQLHTDIIIKEESFMEIFEEINPVNTNLPEDEIGTEELIEHKPLDTEENLFSCDDCNEKFNKQASLVLHKHIHTLDLDRPYVCEVCNKTFNWHSNFVQHKRMHTGEKPFECDVCNKKFTSHSNLIIHKRIHTGEKPFQCDVCNKKFANQSNLVQHKIVHIDENPFSCDICNKTFKRQSSFIGHKRVHAGKRQFSCDFCNKIFKNCTNLVLHKRLHSKSPQYACDLCKKSFYKRNDLVLHKCTHTGKRTSLEKGEKQFQCDVCNKIFLQQSILNKHKKIHTRKRPFSCDICNKRFIWQSHLDQHKIIHTGEKSFSCDVCNKKFTWQSHLDQHKILHIEEKPFSCHICNKAFKRQSSFLGHKRIHTKSMPLSCDICNKKFTHQSKLASHKRIHTGEKPFECDVCNKKFRWPQNLVQHKRIHTGEKPFQCDVCNKKFNQQINLDTHKVLHIKEKPFSCDICNKRFKHRNSLNRHKEIHARKRLFSQQSSLVQHKREKPFQNEVIRSLAEHKKWQHLGENSFPCDIGDKTFSDSLIKQNDNHRTEFSCDVCDKTFTNAIPLALHKRFHTMLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -