Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:7572336-7573967[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00016 0.0034 18.1 0.4 1 23 59 81 59 81 0.97

2 15 7.5e-05 0.0016 19.2 2.2 2 23 88 110 87 110 0.96

3 15 0.0019 0.04 14.8 1.2 1 23 132 154 132 154 0.98

4 15 0.41 8.8 7.4 0.2 1 12 159 170 159 174 0.91

5 15 9.8e-07 2.1e-05 25.1 0.6 3 23 238 258 236 258 0.96

6 15 5.9e-06 0.00013 22.6 0.5 1 23 264 286 264 286 0.98

7 15 0.00015 0.0032 18.2 3.6 1 23 292 314 292 314 0.98

8 15 8.6e-05 0.0018 19.0 1.9 1 23 320 342 320 342 0.98

9 15 0.00031 0.0067 17.2 0.5 1 23 348 370 348 370 0.97

10 15 9.2e-05 0.002 18.9 0.4 1 20 376 395 376 397 0.94

11 15 1.1e-07 2.4e-06 28.1 1.2 1 23 407 429 407 429 0.98

12 15 4.3e-05 0.00093 19.9 0.9 1 23 435 457 435 457 0.98

13 15 0.014 0.3 12.0 2.9 1 23 463 485 463 485 0.98

14 15 0.00019 0.0041 17.9 1.1 1 23 491 513 491 513 0.98

15 15 3.2e-05 0.00069 20.3 1.0 1 23 519 541 519 541 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00016	0.0034	18.1	0.4	1	23	59	81	59	81	0.97
2	15	7.5e-05	0.0016	19.2	2.2	2	23	88	110	87	110	0.96
3	15	0.0019	0.04	14.8	1.2	1	23	132	154	132	154	0.98
4	15	0.41	8.8	7.4	0.2	1	12	159	170	159	174	0.91
5	15	9.8e-07	2.1e-05	25.1	0.6	3	23	238	258	236	258	0.96
6	15	5.9e-06	0.00013	22.6	0.5	1	23	264	286	264	286	0.98
7	15	0.00015	0.0032	18.2	3.6	1	23	292	314	292	314	0.98
8	15	8.6e-05	0.0018	19.0	1.9	1	23	320	342	320	342	0.98
9	15	0.00031	0.0067	17.2	0.5	1	23	348	370	348	370	0.97
10	15	9.2e-05	0.002	18.9	0.4	1	20	376	395	376	397	0.94
11	15	1.1e-07	2.4e-06	28.1	1.2	1	23	407	429	407	429	0.98
12	15	4.3e-05	0.00093	19.9	0.9	1	23	435	457	435	457	0.98
13	15	0.014	0.3	12.0	2.9	1	23	463	485	463	485	0.98
14	15	0.00019	0.0041	17.9	1.1	1	23	491	513	491	513	0.98
15	15	3.2e-05	0.00069	20.3	1.0	1	23	519	541	519	541	0.97

Sequence Information

Coding Sequence: ATGGAACAAGAATTACACCCAAAAACTAAACTATTAAAAGTTAAGGAAGAAGTATGGGAAGAAAATAATTCTGTGGAATTTCCACAAAATGTAAATGAAGACAAACCTATGCCAGATAAAAATGATAAAATTCGTGATCTTGATCATAAACGAACTCCTAAGCAAAGAAAACGTTTCGCGTGTAATATTTGTGATAAAAAATTTCCCGAAATATCTACTTTACGTGAACATAAACTTACTCATTTCGAAGAAAGTGATATTTCATGTGATACGTGTGGTAAAAAATTTACTTGGAAAAGTAATTTAATGCGACATAAACGAAAACAACATGCTTGCGAAAAATCATTTTCAAATGAACACAGTTCAGTTGAATTTGAACACACAAAAATTGCATTTTCATGCAATGTTTGTGAAAAACTATTTGAATCGGAATTTAATTTCATTACACATAAACGAATTCACACTGACGCGAGTTTTTCCTGTGAAGTTTGTGAAAAAGCTTTTACACATTTATTGGAACATCGAATTTTGAAAATTGAAGACAAACCATTTTATATCAAAATTGAAAAACAATTTCATCCAGAATCAATTATTATTAAAGAAGAAATACCAGATCAAAATGTTTTTATGGAACCAGAAGAAATACAACTTGAAGAAGAAAATCAGATTTCGTACGAGTCAGAAGTTCCAATTAAAGAAAAAAATTTAGCTTGTGATGTTTGCGGGAAAACATTTAGTACGAAAGGTAATTTAAAACAACATAAACTTTCTCATTCCACGGAAAAACCATTTTCATGTGATACTTGTGGGAAAACATTTACATTGAAAGGTGGTCTAAAAATGCATATTTTAACTCATTCCAAAGAAAAACCATTCTCCTGTAATGTTTGTAGTAAAAAATTTGCGCGAAAATCAATTTTGCGACATCATCAAAGAATTCATACGGGAGAAAAACCATTTTCTTGTGATTTATGTGAAAAAAAATTTCGTGGAAAAACAGCTTTAAAAGAACATAAACGAACACATACCGGAGAAAAACGTTTTTCTTGTGATATCTGTGGGAAATTGTTTAGTTTGAAAAATAATATGATTATACATCGACGTGATCATACCGGGGAAAAACCATTTTCTTGTGATATTTGTGATAAATCGTTTAAATCGAATGGGAGCTTAAGTGAACATAAGTTTATAAACTATAGTCATTCGACAGATAGACCATTTTCATGTGATATTTGTGGTAAAACATTTATACGAAAATTTTCTTTAATAAAACATCAACGAATTCATACCGGGGAAAAAGATTTTTCATGTAATGTTTGTAAAAAAGCATTTGTCTCATTACCACAATTAAAAAGTCATAATCGAACACATACGGGTGAAAAACCATTTTCGTGTGATGTTTGTGCGAAAAAATTTCCATATCGACATCGTTTAATTACACATAAACGTTTGCATACCGGAGAAAAACCTTACTCGTGTGATATTTGTGAGAAAAAATTTACTTTAAAAGAAACTTTAGATAGGCATAAACAAGTTCATACCGGAGAAAAACCATTTTCATGTGAGATTTGTGGAAAATCATTTACACGTAGAAATATTTTAGTGAAACATCAAAATAATCACGATACATAA
Protein Sequence: MEQELHPKTKLLKVKEEVWEENNSVEFPQNVNEDKPMPDKNDKIRDLDHKRTPKQRKRFACNICDKKFPEISTLREHKLTHFEESDISCDTCGKKFTWKSNLMRHKRKQHACEKSFSNEHSSVEFEHTKIAFSCNVCEKLFESEFNFITHKRIHTDASFSCEVCEKAFTHLLEHRILKIEDKPFYIKIEKQFHPESIIIKEEIPDQNVFMEPEEIQLEEENQISYESEVPIKEKNLACDVCGKTFSTKGNLKQHKLSHSTEKPFSCDTCGKTFTLKGGLKMHILTHSKEKPFSCNVCSKKFARKSILRHHQRIHTGEKPFSCDLCEKKFRGKTALKEHKRTHTGEKRFSCDICGKLFSLKNNMIIHRRDHTGEKPFSCDICDKSFKSNGSLSEHKFINYSHSTDRPFSCDICGKTFIRKFSLIKHQRIHTGEKDFSCNVCKKAFVSLPQLKSHNRTHTGEKPFSCDVCAKKFPYRHRLITHKRLHTGEKPYSCDICEKKFTLKETLDRHKQVHTGEKPFSCEICGKSFTRRNILVKHQNNHDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -