Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997757.1:66272101-66274138[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.4e-05 0.0003 21.4 0.3 1 23 118 140 118 140 0.98

2 14 0.00018 0.0039 17.9 1.5 1 23 146 168 146 168 0.98

3 14 0.00031 0.0067 17.2 3.4 1 23 174 196 174 196 0.98

4 14 0.00049 0.011 16.6 1.0 1 23 202 224 202 224 0.98

5 14 5.8e-06 0.00013 22.6 2.6 1 23 230 252 230 252 0.98

6 14 9e-06 0.00019 22.1 4.1 1 23 258 280 258 280 0.98

7 14 1.3e-06 2.8e-05 24.7 3.6 1 23 286 308 286 308 0.98

8 14 7.6e-05 0.0016 19.1 0.9 1 23 314 336 314 336 0.98

9 14 0.00046 0.01 16.7 2.4 1 23 342 364 342 364 0.96

10 14 0.051 1.1 10.2 3.5 1 23 370 392 370 392 0.94

11 14 5.5e-06 0.00012 22.7 1.8 1 23 396 418 396 418 0.98

12 14 1.5e-06 3.1e-05 24.5 0.8 1 23 424 446 424 446 0.97

13 14 1.4e-06 3e-05 24.6 1.7 1 23 452 474 452 474 0.94

14 14 2.6e-06 5.6e-05 23.8 0.8 1 23 480 502 480 502 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.4e-05	0.0003	21.4	0.3	1	23	118	140	118	140	0.98
2	14	0.00018	0.0039	17.9	1.5	1	23	146	168	146	168	0.98
3	14	0.00031	0.0067	17.2	3.4	1	23	174	196	174	196	0.98
4	14	0.00049	0.011	16.6	1.0	1	23	202	224	202	224	0.98
5	14	5.8e-06	0.00013	22.6	2.6	1	23	230	252	230	252	0.98
6	14	9e-06	0.00019	22.1	4.1	1	23	258	280	258	280	0.98
7	14	1.3e-06	2.8e-05	24.7	3.6	1	23	286	308	286	308	0.98
8	14	7.6e-05	0.0016	19.1	0.9	1	23	314	336	314	336	0.98
9	14	0.00046	0.01	16.7	2.4	1	23	342	364	342	364	0.96
10	14	0.051	1.1	10.2	3.5	1	23	370	392	370	392	0.94
11	14	5.5e-06	0.00012	22.7	1.8	1	23	396	418	396	418	0.98
12	14	1.5e-06	3.1e-05	24.5	0.8	1	23	424	446	424	446	0.97
13	14	1.4e-06	3e-05	24.6	1.7	1	23	452	474	452	474	0.94
14	14	2.6e-06	5.6e-05	23.8	0.8	1	23	480	502	480	502	0.97

Sequence Information

Coding Sequence: ATGGACCATATTAAATATAAACATCAAAAAATTAAAACGGAAATTCAACTAAATGAGGAATTTATTGAGGACCTTATTAAATTTGAACAGCAATTACACACAGAAGTAATTATTAAAGAAGAAATATTAGATGAAAATGATATAAATATACAAAAAGAGAAAAAATTATCTTGTGATGTTGGTGAGAACCGGATTAAAATCGAAAAACAAGTAAAAAATGAATATCCAGAAAATCAAACCGAACAAACATTCGATTGCTATAATAATGACGAACACGTTAAAAATATACAAAATAAATCTGCGAGTAATAAATTAACAACGCATAAACGACTTCATACTGGAGAAAAACCGTATTCATGCGACGTATGTGATAAAAGTTTTAACCGAGCAAATGGTTTAGTTCTCCACAAACGGATACATACTGGAGAGAAACCTTATGCATGTAACGTTTGTGATAAATCATTTAAACTCGAATTTACTCTCCGTTACCATAAACGAATCCATACCGGAGAGAAACCTTATGCATGTGACATCTGTAATCAAAAATTCAGACAACAATGTACTCTAGATCGCCATAAACGAATACATACTGCAGACAAACCTTACGCATGTAACGTTTGTGATAAATCATTTAAACTCGAACTTACTCTCCGTTACCATAAACGAATCCATACGGGAGAGAAACCTTATGCATGTGACATCTGTAATCAAAAATTCAGACAACAAGGTAATCTACATCGCCATAAACGAATACATACTGGAGAGAAACCTTTTTCATGTGATTTCTGTGGTAAATCATTTAGCCACCAAACTAGTTTACGAATTCATAAACGATTACATACGGGGGAGAAACCTTTTTCATGCGAGGTTTGTGATAAAACATTTAACAACAACGATCATTTACGTCTTCATAAACGAACTCATACTAGAGAGAAACCTTATTCATGTGACGTATGCGATAAAACTTTTGGCCAGCGAAGTAATTTAATTTTTCATAAACGAGTACATACGGGAGAGAAACCTTATTCATGTGACGTTTGTGATAAAACATTCAGTCGTAGAAATACTTTACGTTTCCATAAACAAATACATACAGGGGAGAAATCTTATTCATGCGACGTATGTAATAAATCATTTTCCTGGCGAAGTAATTTACTTTTTCATAAACACACACATGCTGGAACTTATTCATGCGACGTTTGTTTTAAAACATTCAACCAGCAAGATAGTTTACTACGCCATAAACGAATACATAATGTAAAGAAAGCTTATTCATGTGACGTTTGTGATCAATCATTTACTCAAAAATACAACTTAATTCGTCATGAACAATTGCATACTGGAAAAAAATCTTATTCTTGTAAGGTTTGTGATAGAACATTTTCACAAAAATATAACTTAAATCGCCATGAAGATTTACATAGTGGAGAGAAACCTTATTCATGCGACGTTTGTGATAAATCATTTGCCCAGAAAAGTTATTTAGCTAAACATAAACTACTTCATTCAAATGTGTAA
Protein Sequence: MDHIKYKHQKIKTEIQLNEEFIEDLIKFEQQLHTEVIIKEEILDENDINIQKEKKLSCDVGENRIKIEKQVKNEYPENQTEQTFDCYNNDEHVKNIQNKSASNKLTTHKRLHTGEKPYSCDVCDKSFNRANGLVLHKRIHTGEKPYACNVCDKSFKLEFTLRYHKRIHTGEKPYACDICNQKFRQQCTLDRHKRIHTADKPYACNVCDKSFKLELTLRYHKRIHTGEKPYACDICNQKFRQQGNLHRHKRIHTGEKPFSCDFCGKSFSHQTSLRIHKRLHTGEKPFSCEVCDKTFNNNDHLRLHKRTHTREKPYSCDVCDKTFGQRSNLIFHKRVHTGEKPYSCDVCDKTFSRRNTLRFHKQIHTGEKSYSCDVCNKSFSWRSNLLFHKHTHAGTYSCDVCFKTFNQQDSLLRHKRIHNVKKAYSCDVCDQSFTQKYNLIRHEQLHTGKKSYSCKVCDRTFSQKYNLNRHEDLHSGEKPYSCDVCDKSFAQKSYLAKHKLLHSNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -