Ccar012389.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:78957069-78959150[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.7e-06 0.0001 22.9 1.9 1 23 237 259 237 259 0.97 2 15 4.3e-05 0.00092 19.9 2.6 1 23 265 287 265 287 0.97 3 15 1.7e-05 0.00036 21.2 1.8 1 23 293 315 293 315 0.97 4 15 6.9e-05 0.0015 19.3 0.5 1 21 321 341 321 346 0.95 5 15 0.00056 0.012 16.4 0.1 2 23 353 374 352 374 0.90 6 15 7.9e-06 0.00017 22.2 0.6 1 23 380 402 380 402 0.98 7 15 2e-06 4.4e-05 24.1 0.9 1 23 408 430 408 430 0.97 8 15 0.0029 0.063 14.1 0.1 1 23 436 458 436 458 0.98 9 15 0.0057 0.12 13.2 3.1 1 23 464 486 464 486 0.98 10 15 0.00011 0.0024 18.6 1.8 2 23 501 522 500 522 0.95 11 15 0.00021 0.0045 17.8 2.7 1 23 527 549 527 549 0.98 12 15 0.00015 0.0032 18.2 1.6 1 23 555 577 555 577 0.96 13 15 0.00022 0.0048 17.7 2.6 1 21 583 603 583 604 0.95 14 15 0.0023 0.05 14.4 2.2 1 23 611 633 611 633 0.97 15 15 7e-05 0.0015 19.2 1.2 1 21 669 689 669 690 0.95
Sequence Information
- Coding Sequence
- ATGGAAAATAATTTATTGCATAAAAAAAATACAACTTACTCAATTAACTATGAAAAAATTAAAACCGAACAAAAATTACATATGAAACCAATAACTAAAGATGAAATGGAAAATAACAAAAGTGAACTGGAATTTCAGGAAGTAAAATCAATGTTTGAACGTATAAAAATCGAACGACAATTACATACCGAGTTAATAATAAAACATGAAATCCTAGAAGAGAGCATTTTGGATGAAGATGAAAATAATACTTGTTTAACTAAAAATAATATCATTAAAACGGAACAGCAATTTGATGCAAAACCAATAACTGTAGATGGAATTGGAAAGAATAAATTTGAACTGGAGTTAAATGCGAAATTAATGTTAGATGAACGTATAAAAATCGAACGACAGTTACATACTGAGTTAATAATTAAAGATGAAATTCCAGAAGAGAAAATTTTGGATGAAGATGAAAATAAAACTTGTTTAACTAAAAACAAAAACATTAAAACGGAACAGCTATTAGATGCAAAACCAACTATAGATGGAATTGAAAAGAATAAATCTGAACTGGAGTTAGATGGGAAATTGATGTTAGATGAACGTATAAAAATCGAACGACAATTACATACTGAGTTAATAATTAAAGATGAAACTTTGGAAGAAGATAATATTTCAGATGAAAAAGTACTGAAACAAAATGAAATAAACGGGGAAAAAAATTTTTCATGTAATGTATGTGAAAAAAAATTTACTAATAAAAACAATTTAGCTAGACATAAACGAGCTCATACTGGAAGAAGGTCTTTTCCATGTGACTCTTGCAATAAAACATTTTATCGACAAGACCATTTAAATATTCATAAAAACATTCATGGTGCAGAAAATAGTTTTTCATGTGACAAATGCAATAAAACTTTCTCTAGAAAAGCCAAGTTAAATGAACACAAAATAATCCATAGTGTTGAAGAATGTTTTTCATGCGATGTTTGTAATATAAAATATACCAACAAATCTTATTTGGCTAGACATATACGACTTTCAGTAAACCATAAAAAGGAAAGGCGTTTTCCATGTATTTCTTGTGATAAAGCATTTTCTTCGAACGCTGATTTGATTAGGCATACACAAATCCACACAGGAGTAAAACCTTATTCCTGTGACGTTTGTGATAAAGATTTTACGAGGCAGACCAGTTTAGTGATACATAAAAGAATTCATAGTGGAGAAAAACCCTTTTCGTGTGATATTTGTGATAAAACATTTACTCGCCGTGATTTATTAAGTAGGCATAAAATAATTCATAGTATTAAAAAACCTTTTTCGTGTGATATTTGCGAAGCAAAATTTATTCGACGTGGTGTATTAAGTGCACATAAAAGAATTCATAGTGAAGGAAAAATTTTTTCTTGCGATACTTGTGATAAAAAATTTTATTGGAAAACCTCATTAAATAAACATAAAAAAATTCACAAAAATGAAAAGCAGAATAGTAATTTCTCTACTTGCCATGTTTCATGTAATGTTTGTAATAAAACTTTTAAAAAGCAAAAGTATTTAAATGCCCATAAACTATATCATGAAGAAGAGCATTTTTCATGCAATTTTTGTGATAAAAAATTCTTTTTTAAATCCGGTTTGATTAGCCATACACGAATTCATACTGGAGAAAGGAATTACCTATGTGACGTTTGTGGTAATTCATTTTGTTATAAAAGTAGTTTGATTATCCATAAACGAATTCATACAGGAGAGAAACCTTATTCGTGCCATGTTTGTAACAAAACATTTATTTCTCAACATGGCCTAAGGTATCATAAACGAATTTTTAACAGTGAAATACATTTTTCATGTGATGCATGCAGAAAAACATTTACTAGTTTCGATAAGTTAAACAATCATAAACAAATCCATACCGAAGAAAAAAGTTTTGCCCGTGATGTTTATAATACAAGATTTAATCAACAAGACAATATAACCGAACATGGTCGCATTTACTCTGACGAAAAATCTAGAAATTTTTCGTGTAAGTTTTGTAATAAAACATTTACTATGAAAAGCGATTTGATTAACCATAGACAAGTGTGGTGTTTATGA
- Protein Sequence
- MENNLLHKKNTTYSINYEKIKTEQKLHMKPITKDEMENNKSELEFQEVKSMFERIKIERQLHTELIIKHEILEESILDEDENNTCLTKNNIIKTEQQFDAKPITVDGIGKNKFELELNAKLMLDERIKIERQLHTELIIKDEIPEEKILDEDENKTCLTKNKNIKTEQLLDAKPTIDGIEKNKSELELDGKLMLDERIKIERQLHTELIIKDETLEEDNISDEKVLKQNEINGEKNFSCNVCEKKFTNKNNLARHKRAHTGRRSFPCDSCNKTFYRQDHLNIHKNIHGAENSFSCDKCNKTFSRKAKLNEHKIIHSVEECFSCDVCNIKYTNKSYLARHIRLSVNHKKERRFPCISCDKAFSSNADLIRHTQIHTGVKPYSCDVCDKDFTRQTSLVIHKRIHSGEKPFSCDICDKTFTRRDLLSRHKIIHSIKKPFSCDICEAKFIRRGVLSAHKRIHSEGKIFSCDTCDKKFYWKTSLNKHKKIHKNEKQNSNFSTCHVSCNVCNKTFKKQKYLNAHKLYHEEEHFSCNFCDKKFFFKSGLISHTRIHTGERNYLCDVCGNSFCYKSSLIIHKRIHTGEKPYSCHVCNKTFISQHGLRYHKRIFNSEIHFSCDACRKTFTSFDKLNNHKQIHTEEKSFARDVYNTRFNQQDNITEHGRIYSDEKSRNFSCKFCNKTFTMKSDLINHRQVWCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -