Ccar003687.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:49826644-49831524[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00031 0.0067 17.2 0.2 2 23 315 336 314 336 0.96 2 14 8.2e-06 0.00018 22.2 0.3 2 23 343 364 342 364 0.96 3 14 0.00051 0.011 16.5 0.4 1 23 370 392 370 392 0.99 4 14 1.1e-05 0.00024 21.7 0.3 1 23 398 420 398 420 0.97 5 14 2.8e-06 6.1e-05 23.6 0.5 1 23 426 448 426 448 0.98 6 14 2.8e-05 0.0006 20.5 0.8 1 23 454 476 454 476 0.95 7 14 1.1e-05 0.00024 21.8 3.4 1 23 482 504 482 504 0.98 8 14 0.0015 0.032 15.1 0.0 2 23 728 749 727 749 0.96 9 14 8.1e-07 1.8e-05 25.3 3.4 1 23 755 777 755 777 0.98 10 14 0.00021 0.0046 17.7 0.8 1 23 783 805 783 805 0.98 11 14 1.1e-05 0.00024 21.7 1.4 1 23 811 833 811 833 0.98 12 14 0.0004 0.0087 16.9 0.1 1 23 839 861 839 861 0.97 13 14 0.0026 0.056 14.3 0.7 1 23 867 889 867 889 0.96 14 14 0.0032 0.069 14.0 4.7 1 23 901 923 901 923 0.98
Sequence Information
- Coding Sequence
- ATGAATGATAATTTGCGAGCATCAAATTTGCAAATAAATTTACAGGAAATTTGTAGAACTTGTTTAATGGACAAAAATGATTTAAGAGAAATTGTTTGTTTTATACCTTTATTACAAAAGTGTACTTCAATACAAATTGACTTGGAGGACGAATTACCAAAGTTAATTTGCTTTGAATGTATGACTAAATTAAATAAGGCGATTGAATTTTGGAGACAATGTGAAGTGTCCGAAAAAATTTTGTTACAATTAAGGCAATTTCAAGAGAATAGTATATTTTATAAAGAAAAGGAAGCTTATTCATCACCACATAATGAAGTAAATACTATAAAAGTAAATCAAATCAAAACTGAAAGTTCTCATCATGAAAATGAGGACATTCCGAATACATGTGAAGAAAAAAAGTTATTCATAAGTGAGAATAATTTGTATACATACGATGAAAATAATACATTTAAAATCAACAATGTATTTAATATTGTAAATACCAAGTTAAATATTGCAAGTGGCTCATCTGAAAGGTACGAAACTATTATTAACGAAAATAAAAACAATTTAGACATTTCTAAATTGCGAAATGTCGATTTAAAATCAAAGTATAACACCCAAAACAAAATTGATGATGATAATGATTTTAATGACCAATCTTTAAGCGAAATATTTATTAAAGAAGAGCCCAAGCACTCAGATTTTGAGAATTGTGAAAGTGTCAGCCAAAATAGCGCTGAATATTTAGATTTAAGGAAGAAAAAACCATTTAGAAAAACTAATAGGTCAAATAGAAAATTGAAACATAAAAATAAACTAGAAACAAAAAAGTATGTCGATACAATAAACAATGAACAAAATGGAAAATTTGAACTTAAAAAAATTAAAATAGAAGAGGCTATAGATGATAAACAATTAGAAGTGAAAGTAGATGATACAGCAAACATTGAAACACAATGCCCTCAATGTGGAAAATCGTTTGAATTAAATGAAGATCTAGAAATTCATAAGTTACAACATAAAAAGTTTGATGATTTGATTTGCCCCAAGTGCCCAAAGTCTTTTGGAAACGAACGAAATTTAAAAAGACATTTAATCATGCATATGGTTAACAAACCGTATAAATGCGATTTTTGTGAGAAAGGTTTTGCTGGATCAGGTGATCGAATTCGTCATTTACGAACTCATACAGGTGAGCGACCGTACATATGTCAAACATGTGGAAAACCATTTCCAGATTCTAGTGGATTATCACAACATATGAAATTTCACAATAGTATCAAAAGTTACATATGTTCAGTTTGTTCCAAAGGTTTTGTGTTTCCATATGAACTGCGACGCCATATGCGAATGCATACTGGTGAAAAACCGTTTTTATGTTCTCTTTGCGGAAAGGGTTTTCGTGATAGTACTGATCTAAAAATACATACAAGAAACCATACTGGAGAACGTCCTTTTGCATGTTCGGAATGTGATAGGACTTTTAAAATAAAAAAACATTTAAATCTTCATATGCGAACTCATACAGAAAATGAGGGTTTGCAAAGAATTTGTCGTATTGTAGATTTATTAAAAGAATGTACTTCAATTCATGTCGATATGGCAGATGATTTACCAAAATTAATTTGTCTCGAATGTACCAAAAAACTAAATATCGCCTTTTTATTTAGAAAACAATGTGAATTGTCTGAAAAAACTTTGTTACAACTAAGAGAATTTAAGGAAACATCTATTAAGCATGAAAAGTTAGAAAGAAATGAAGTTTATATTAAATCCGAGGGTTCTAATGATTTACACAAAGATAATTTGTATACATGTGATGAAAATAATACATTTAAAATAAACAATGTGTTAAGTTTTGAAAATACTAAATTTAATGAAAATAAAAATTCCTTAGATGATACTAAAATAAAAAATAGTAGCTTAGAAGGAAATCATAAGACAGCTAAGAAAAATTTACTTTGTGATTTTGATGATCAACTTATCAATGAACGATTATTCAATGAGCACAATGATTCAGTACAGGAAGATAACGATTACGAAATTCCTGATCAATTATGTAGTGACCAATCTGTAGATTCAAAAACAAATAAATGGAATAATAAATTTAAAGGATCCAATAGAAAATTGAAAATTAAAATAAATCGAAAATTGAAAGAAGAAACAAATTATAATACAATAACCGATGGCCTGGTATGTCTTGACTGTGAAAAATCTTTTGAATTAGAAGGAGATCTTGAAATTCATATGCTGAAACATCAAAAGTTTGATAATTTTATTTGCCCTAAATGTTCCAAATCTTTTGCAAATAGACACAATTTAAGAAGACATTTAAACACACATATGATTACAAAACCTTTTAAATGCAAATTTTGTGATAAAAGTTTTGCTGCACCTGGTGATCGAAATCGTCATTTACGACTTCATACGGGTGAAAAACCGTACATATGCACAACGTGTGGTAAAGCATATACAGATAGTAGTCGATTATCAAAACATATGAAATACCATAGCGATGTAAAGGATTTCGCATGTACAGTTTGTCCTAAATCCTTCTTGTTTCCAAATGCACTTCGAGTTCATATGCGTGTGCATACTGGTGAAAAACCTTATTTATGCACTGAATGTGGAGATAGTTTTAAATCAGCATTAAGCTTAAAAACACATGAACGTAAACATACAAGAGATGTAGAAGGTGTTGAAGAGGAATTGTTTTGCTGTAATATTTGTAGGAAAATTCTTACATCAAATCAAAGTTTATCAAAACATAGAAGAACACATAGTAAAGGAAAATGA
- Protein Sequence
- MNDNLRASNLQINLQEICRTCLMDKNDLREIVCFIPLLQKCTSIQIDLEDELPKLICFECMTKLNKAIEFWRQCEVSEKILLQLRQFQENSIFYKEKEAYSSPHNEVNTIKVNQIKTESSHHENEDIPNTCEEKKLFISENNLYTYDENNTFKINNVFNIVNTKLNIASGSSERYETIINENKNNLDISKLRNVDLKSKYNTQNKIDDDNDFNDQSLSEIFIKEEPKHSDFENCESVSQNSAEYLDLRKKKPFRKTNRSNRKLKHKNKLETKKYVDTINNEQNGKFELKKIKIEEAIDDKQLEVKVDDTANIETQCPQCGKSFELNEDLEIHKLQHKKFDDLICPKCPKSFGNERNLKRHLIMHMVNKPYKCDFCEKGFAGSGDRIRHLRTHTGERPYICQTCGKPFPDSSGLSQHMKFHNSIKSYICSVCSKGFVFPYELRRHMRMHTGEKPFLCSLCGKGFRDSTDLKIHTRNHTGERPFACSECDRTFKIKKHLNLHMRTHTENEGLQRICRIVDLLKECTSIHVDMADDLPKLICLECTKKLNIAFLFRKQCELSEKTLLQLREFKETSIKHEKLERNEVYIKSEGSNDLHKDNLYTCDENNTFKINNVLSFENTKFNENKNSLDDTKIKNSSLEGNHKTAKKNLLCDFDDQLINERLFNEHNDSVQEDNDYEIPDQLCSDQSVDSKTNKWNNKFKGSNRKLKIKINRKLKEETNYNTITDGLVCLDCEKSFELEGDLEIHMLKHQKFDNFICPKCSKSFANRHNLRRHLNTHMITKPFKCKFCDKSFAAPGDRNRHLRLHTGEKPYICTTCGKAYTDSSRLSKHMKYHSDVKDFACTVCPKSFLFPNALRVHMRVHTGEKPYLCTECGDSFKSALSLKTHERKHTRDVEGVEEELFCCNICRKILTSNQSLSKHRRTHSKGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -