Ccar011924.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:89489012-89490987[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.16 3.4 8.7 0.2 6 21 79 94 76 98 0.88 2 19 5.8e-06 0.00012 22.7 4.7 1 23 101 123 101 123 0.99 3 19 0.0067 0.15 13.0 4.1 3 23 131 151 129 151 0.98 4 19 0.00032 0.0069 17.2 4.9 3 23 159 179 157 179 0.98 5 19 0.00074 0.016 16.0 5.1 3 23 187 207 185 207 0.98 6 19 0.00023 0.005 17.6 0.9 1 23 213 235 213 235 0.98 7 19 5.6e-05 0.0012 19.5 3.6 1 23 241 263 241 263 0.98 8 19 0.00032 0.0069 17.2 4.9 3 23 271 291 269 291 0.98 9 19 0.00027 0.0058 17.4 2.7 3 23 299 319 297 319 0.98 10 19 0.00024 0.0052 17.6 3.7 1 23 325 347 325 347 0.98 11 19 0.00078 0.017 16.0 2.3 1 23 353 375 353 375 0.98 12 19 5.6e-05 0.0012 19.5 3.6 1 23 381 403 381 403 0.98 13 19 0.00066 0.014 16.2 4.5 3 23 411 431 409 431 0.98 14 19 0.00027 0.0058 17.4 2.7 3 23 439 459 437 459 0.98 15 19 1.1e-05 0.00024 21.8 3.0 1 23 465 487 465 487 0.98 16 19 0.007 0.15 12.9 3.9 1 23 493 515 493 515 0.98 17 19 0.00027 0.0058 17.4 1.5 1 23 521 543 521 543 0.98 18 19 0.0012 0.026 15.4 4.4 1 23 550 573 550 573 0.96 19 19 0.035 0.77 10.7 0.2 1 20 609 628 609 630 0.94
Sequence Information
- Coding Sequence
- ATGGACGGTGAAAATGTGAAAAATGAAGAATTCTGTTTAAAATTAGAAATCAAAGAAGAGGTTAATGACGAATTATTATATGAAGTGGATTCGAAAAATAATGAAATATGTGACAATATTAGTGATAATAAGTTACATTCAGAATTAATTTTAAAAGATGAAAGCTATGATGCAATATTTGAAGAAGCTGAAACTGATTTAAATTATCATGAATTGTTAAAGGAAAATTATTTTTGTGATAAAATTTTTACAACTGAAATTGAATTACGTAACCATGAAAAATTACTCAAACATAAATTGTATTCATGTGATGTGTGTGATAAAAAGTTTAAGCAACAACATTATTTAACTGTTCATAAACGAACACATACTGGAGAAAAACCATTTGGTTGTGATATTTGTAATAAAAAATTTATCCTAAAACACCATTTAGTTGGACATAAACGAACACATACTGGAGAAAAACCATTTGGTTGTGATATTTGTAATAAAAAATTTATCCAAAAACACCATTTAGTTCTACATAAACGAACGCATACTGGAGAAAAACCATTTGGTTGTGATATTTGTAATAAAAAATTTATCCAAAAACACCATTTAGTTCTACATAAACGAAGACATACTGGAGAAAAACCATTTTCTTGTGATGTTTGTGAAAACAAATTTAATAGAAAAGACAATTTAGTTGTACATAAACGATTACATACTGGAGAAAAATCATTTAGTTGTGATATTTGTAATAAAAAATTTATCCAAAAACACCAATTAGTTCTACATAAACGATCACATACTGGAGAAAAACCATTTGGTTGTGATATTTGTAATAAAAAATTTATCCAAAAACACCATTTAGTTCTACATAAACGAACACATACTGGAGAAAAACCATTCGGTTGTGATATTTGTAATAAAAAATTTATCCAAAAACACCAGTTAGTTCTACATAAACGATCACATACTGGAGAAGAGATATTTTCGTGTGATGTTTGTGATAAAAAATTTAACCTAAAACACAATTTAGTTCTACATAAACGAAGACATACTGGAGAAAAACCATTTTCTTGTGATGTTTGTGAAAACAAATTTAATAGAAAAGACCATTTAGTTGTACATAAACGATTACATACTGGAGAAAAATCATTTAGTTGTGATATTTGTAATAAAAAATTTATCCAAAAACACCAATTAGTTCTACATAAACGATCACATACTGGAGAAAAACCATTTGGTTGTGATATTTGTAATAAAAAATTTATCCAAAAACACCATTTAGTTGGACATAAACGAACACATACTGGAGAAAAACCATTCGGTTGTGATATTTGTAATAAAAAATTTATCCAAAAACACCAGTTAGTTCTACATAAACGATCACATACTGGAGAAGAGATATTCTCGTGTGATGTTTGTGATAAAAAATTTGTTCACTCACAACTTTTAATTCGACATAAACGAACACATACTGGGGCAAAACCATTTTCATGTTATATTTGTGAAAAAAAATTTAAACACCAATGCGTTTTAGTTGCACATGAACGAATTCATACTGGAGAAAAACCATTCTCCTGTGATGTTTGTGAGAAAAAATTTAACATAAAACAGAATTTAGTTCGACATAAACGATTACATACTACTGGGAAAGAATCATTCTCATGTGACGAATGTGAAAGAAAATTTAACTCAGAACACCATTTAATTAAACATAAACTAAAAATACATACTACAGAAAAACCAGCCCCGTGTGATGGTCATAATAAAACATTTCAGTTTAAGAAGAGTTTAGTAAAACAAAGACTTGTACAATTAAGACCACCAACACCTCCATACGTATGTGAAGATTGTGATCTAATTATTACCAATCAAAATGAATTAAAAGATCATAAACATAAAAATATTGTTATTTTAATAAACAAATAA
- Protein Sequence
- MDGENVKNEEFCLKLEIKEEVNDELLYEVDSKNNEICDNISDNKLHSELILKDESYDAIFEEAETDLNYHELLKENYFCDKIFTTEIELRNHEKLLKHKLYSCDVCDKKFKQQHYLTVHKRTHTGEKPFGCDICNKKFILKHHLVGHKRTHTGEKPFGCDICNKKFIQKHHLVLHKRTHTGEKPFGCDICNKKFIQKHHLVLHKRRHTGEKPFSCDVCENKFNRKDNLVVHKRLHTGEKSFSCDICNKKFIQKHQLVLHKRSHTGEKPFGCDICNKKFIQKHHLVLHKRTHTGEKPFGCDICNKKFIQKHQLVLHKRSHTGEEIFSCDVCDKKFNLKHNLVLHKRRHTGEKPFSCDVCENKFNRKDHLVVHKRLHTGEKSFSCDICNKKFIQKHQLVLHKRSHTGEKPFGCDICNKKFIQKHHLVGHKRTHTGEKPFGCDICNKKFIQKHQLVLHKRSHTGEEIFSCDVCDKKFVHSQLLIRHKRTHTGAKPFSCYICEKKFKHQCVLVAHERIHTGEKPFSCDVCEKKFNIKQNLVRHKRLHTTGKESFSCDECERKFNSEHHLIKHKLKIHTTEKPAPCDGHNKTFQFKKSLVKQRLVQLRPPTPPYVCEDCDLIITNQNELKDHKHKNIVILINK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332832;
- 90% Identity
- -
- 80% Identity
- -