Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997759.1:15853403-15855118[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.2e-06 6.8e-05 23.5 2.7 1 23 88 110 88 110 0.98

2 14 0.00066 0.014 16.2 4.4 1 23 116 138 116 138 0.98

3 14 0.0012 0.026 15.3 0.2 1 23 144 166 144 166 0.98

4 14 0.00015 0.0033 18.2 1.2 1 23 172 194 172 194 0.98

5 14 3.7e-05 0.0008 20.1 0.7 1 23 200 222 200 222 0.98

6 14 5.5e-06 0.00012 22.7 1.5 1 23 228 250 228 250 0.95

7 14 2.7e-07 5.8e-06 26.8 0.2 1 23 256 278 256 278 0.98

8 14 1.5e-06 3.3e-05 24.5 0.5 1 23 331 353 331 353 0.98

9 14 6.3e-05 0.0014 19.4 6.4 1 23 359 381 359 381 0.97

10 14 2.2e-05 0.00048 20.8 0.7 1 23 387 409 387 409 0.98

11 14 0.0023 0.049 14.5 2.1 1 23 415 437 415 437 0.98

12 14 0.00031 0.0067 17.2 0.6 1 23 443 465 443 465 0.96

13 14 6.8e-05 0.0015 19.3 0.6 1 23 471 493 471 493 0.98

14 14 0.00029 0.0062 17.3 2.4 1 23 499 521 499 521 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.2e-06	6.8e-05	23.5	2.7	1	23	88	110	88	110	0.98
2	14	0.00066	0.014	16.2	4.4	1	23	116	138	116	138	0.98
3	14	0.0012	0.026	15.3	0.2	1	23	144	166	144	166	0.98
4	14	0.00015	0.0033	18.2	1.2	1	23	172	194	172	194	0.98
5	14	3.7e-05	0.0008	20.1	0.7	1	23	200	222	200	222	0.98
6	14	5.5e-06	0.00012	22.7	1.5	1	23	228	250	228	250	0.95
7	14	2.7e-07	5.8e-06	26.8	0.2	1	23	256	278	256	278	0.98
8	14	1.5e-06	3.3e-05	24.5	0.5	1	23	331	353	331	353	0.98
9	14	6.3e-05	0.0014	19.4	6.4	1	23	359	381	359	381	0.97
10	14	2.2e-05	0.00048	20.8	0.7	1	23	387	409	387	409	0.98
11	14	0.0023	0.049	14.5	2.1	1	23	415	437	415	437	0.98
12	14	0.00031	0.0067	17.2	0.6	1	23	443	465	443	465	0.96
13	14	6.8e-05	0.0015	19.3	0.6	1	23	471	493	471	493	0.98
14	14	0.00029	0.0062	17.3	2.4	1	23	499	521	499	521	0.98

Sequence Information

Coding Sequence: ATGGAAATAAATAATCATTTGAGTATTAACATAAAGAATAATAAACTTCAAAAACAAATTAAAGATGAAATATTAGATGATCCACTTAAATATAAAATACCATTCGAAAACAACTTTGTTAACGTAAAATATGAAAATGAAACAGTCAATTATGAAAATATTAAACTTGAAAAAGAATTAAATTCAGAGTTAATTATTAAAGATGAAATATTTGATGAAAGTGTTGTAAAATCATTCGGAACATGTGTTGGAGAAAAGTCATATCCATGTGACATTTGTAAAAAATCATTTAAAAATAAGAATCATTTAATTAATCATTCACGGATACACACTGGAGAAAAACCATTTTCTTGTGATTATTGTGAAAAATCATTTCGAATCAAACATCATTTAGTTGGACATACGAGGATCCATACTAAAGATAAAACATTTTCATGTGAAGTTTGTGATAAGATACTCACTGATCGAGTCACTTTAGTTTTACATAAACGAATTCACACGGGTGAAAAACCATTTTCATGTGATATTTGTGAAAAATTATTTAGAATTAAAAATGATTTAATTCGACATAAACGAACACACAGTGGAGAAAAACCATTTTCATGCGATATTTGTGATAAGAAATTTAGTGAGCAAGGTAGTTTAGGTAAACATAAACTGACTCACTCGGGAGAAAAACCATTTTTGTGTGATATTTGTGAAAAATCGTTTAGAGTGAAAAACAATTTAACTAGACACAAACGAATACACACAAAAGAAAATCCGTTTCCATGTGATATTTGTGGGAAGACATTTGCTCGACAAAGCCTTTTAGTTCAACATAAGCGGATTCATACCGAAGAAAATTCATTTACAAGTGATATTTTAGAAGAAAGTACAACAATCCAGAATAATCCACCAGAAAATAGTACTAAAAATTTGAAAATTGATAAAAAACAATTAGATGAAAATGTTTTAGAATCACCAGGAATAGATGTTGAAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTGCTCTTAAAGGTAATTTAGTTAGACATCAACGAATTCACACGGGAGAAAAACCATTTTCATGTAAAATTTGTAAACGATCATTTACAAACAAACATCATTTAGATAAACATGTCCGTGGTCATACCGGAGAAAAACCATTTTCATGTAACGTTTGTGATACAAAATTCACTAGTCGAGCCAGTTTAATTGATCATAAACGAATTCATACGGGTGAAAAACCATTTTCCTGTGAAATTTGTGAAAAATCATTTAGAATTAAACATATTTTAATTCGACATAAACGTATACATTCTGAAGAAAAACCATTTTCATGTTACTTTTGTGATAAAATATTTTCTGACCAAATCAGTTTAGTTAAACATAAAGCGATTCATTCTGGGGAAAAATTATTTTCGTGTGATGTTTGTGAAAAATCATTTGTAGCGAAAAATGATTTATCTCGACATAAACGCATACATTCTGGAGAAAAATTATTCTCCTGTGATATTTGTAATAAAACATTTTATAAGAAAGATCGTTTAGATCAGCATAAACGTATTCATCAAGTTAAAATTGTTCACGATCCACTTAAAAATGAAATTCCAGAAAACAGTCATGTGAAATATGAAAAAATTGACGAACCAGAGGAATATTTGTCTACAGTCGATGAAAATATGATGTTTGAAACAGAATTAAATTCCGAATTAATTATTTAA
Protein Sequence: MEINNHLSINIKNNKLQKQIKDEILDDPLKYKIPFENNFVNVKYENETVNYENIKLEKELNSELIIKDEIFDESVVKSFGTCVGEKSYPCDICKKSFKNKNHLINHSRIHTGEKPFSCDYCEKSFRIKHHLVGHTRIHTKDKTFSCEVCDKILTDRVTLVLHKRIHTGEKPFSCDICEKLFRIKNDLIRHKRTHSGEKPFSCDICDKKFSEQGSLGKHKLTHSGEKPFLCDICEKSFRVKNNLTRHKRIHTKENPFPCDICGKTFARQSLLVQHKRIHTEENSFTSDILEESTTIQNNPPENSTKNLKIDKKQLDENVLESPGIDVEEKPFSCDVCNKTFALKGNLVRHQRIHTGEKPFSCKICKRSFTNKHHLDKHVRGHTGEKPFSCNVCDTKFTSRASLIDHKRIHTGEKPFSCEICEKSFRIKHILIRHKRIHSEEKPFSCYFCDKIFSDQISLVKHKAIHSGEKLFSCDVCEKSFVAKNDLSRHKRIHSGEKLFSCDICNKTFYKKDRLDQHKRIHQVKIVHDPLKNEIPENSHVKYEKIDEPEEYLSTVDENMMFETELNSELII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -