Ccar010915.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:7574771-7577113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00051 0.011 16.5 1.4 1 23 83 105 83 105 0.96 2 17 2.3e-06 5e-05 23.9 2.9 1 23 111 134 111 134 0.96 3 17 0.00051 0.011 16.5 1.4 1 23 195 217 195 217 0.96 4 17 2.3e-06 5e-05 23.9 2.9 1 23 223 246 223 246 0.96 5 17 6.1e-05 0.0013 19.4 4.1 1 23 290 313 290 313 0.95 6 17 0.81 17 6.5 3.4 1 21 342 362 342 364 0.94 7 17 0.55 12 7.0 0.2 1 12 369 380 369 385 0.90 8 17 0.0011 0.024 15.5 1.2 1 23 449 471 449 471 0.98 9 17 3.9e-05 0.00084 20.0 0.7 1 23 505 527 505 527 0.97 10 17 5.7e-05 0.0012 19.5 3.0 1 23 534 557 534 557 0.97 11 17 0.00057 0.012 16.4 1.9 1 23 563 586 563 586 0.96 12 17 0.00077 0.017 16.0 0.8 1 23 592 614 592 614 0.97 13 17 0.0012 0.027 15.3 2.6 1 23 621 643 621 643 0.98 14 17 1e-05 0.00022 21.9 0.6 1 23 649 671 649 671 0.98 15 17 0.00023 0.0049 17.6 4.8 1 23 677 699 677 699 0.97 16 17 6.8e-05 0.0015 19.3 0.0 1 23 705 727 705 727 0.97 17 17 6e-06 0.00013 22.6 0.5 1 23 733 756 733 756 0.95
Sequence Information
- Coding Sequence
- ATGTCAAAAGATTTAAATTTCGATGAAAAAAATCTTTACATAAGTGATGAATTGATTAAAATGGAAAAAGAATTACATTCAGAAATAGAATTAGTGGTTAAGGAAGAAGACGCGGAAGAAAATGTTTCAGAAGAACCTCAAGAAAATCAGAATGAAAATCAATTTTTTTCATGTGATGAAAATCAAATATTTAACAGCGAAATCAAGTTAGTTAACAATAAACAAATTCTTAATCAAGAAAAGCGTTTCACTTGTGATGTTTGTGATACAAAATTTGCACGGAAGAATCATTTACTCGAACATAATCTTATTCATTCCAAAGAAAAGAATTTCTCATGTGATCTTTGTGGTAGAAAATTCACTCGTCAAAGTAGTTTAAATCGACATAAACGACAACAACATGCCGAGCAAGAACCATTTTCATCAAATATTAAAGAACAAGGTTACACAAATGAATATTATTCCGAAGAACCTCAAGAAAATCGGAATGAAAATCAATTTTTGTCATGTGATGAAAATCAAATATTTAACAGCGAAATCAAGTTAGTTAACAATAAACAAATTCTTAATCAAGAAAAGCGTTTCACTTGTGATGTTTGTGATACAAAATTTGCCCGGAAGAATCATTTACTCGAACATAATCTTATTCATTCCAAAGAAAAGAATTTCTCATGTGATCTGTGTGGTAGAAAATTCACTCGTCAAAGTAGTTTAAATCGACATAAACGACAACAACATGCCGAGCAAGAATTATTTTCATCAAATATTAAAGAACAAGGTTACACAAATGAATATTTTTCTGAAGAACCTCAAGAAAATCTGAATGAAAAAGAAGGTTTTTCATGTGATAAAGATCAAACATTTTATTTCTCGTGTGATTTTTGTAGTAAAAAATTTACTCGTCAAAGCAGTTTAAATCGACATAATCGACAACAACATGCCGAGGAGGAAGAATCATTTTCTTTGGATATTAAGAATGAAGTAATTAATTCTGAGCCTAAACAAGGTTTCAAAAATGAACAGTTTTCTTGCGATGTTTGTGAAAAACTGTTTGAATCGGAATTTAATTTCGTTACACATAAACGCTGTCATACCGATGAGACATTTTCATGTGGCGATTGTGAAAAAGCTTTTACTCATTTATTGGAACATCAAATTTTGAAAATTGAAGATAAACCGTTTTATATAAAAGTTGAAAAACAATTTCATATGGAAATCATACGGAAAGAAGAAATACCAGAAGTAAAATATGAAAATGTTTCGATGGAACTACAGCAAATCCACACAGACGAAAAAAAATATTTTTCAATGGAACTAAAACAAATTCTTACCGAAGAAAAACATTTTTCATGTAATGCTTGTGAAAAAATGTTTACCAGGGAAATTTACTTAAATCAACATAAACTTACTCATTCGACAGAAAAAGATTCGATGAATTCGAATATAACACAAAATTCGTGTTCAAGGACACTTTTAGCTCAACATAAACGACAACATACCGATGAAAAACCATTTTCCTGTGAGATTTGTGGTAAAACATTTAATTTACGATCAAAGCTACTTCAACATCGTGAAATTCATATCGAAAAAGAAAAATCATTTTCATGTGATGTTTGTAATAAAACGTTTACGTTTAAACGTTATTTACTACAACATATTAAACGAACTCATTCGAGAAAAAAGAAATTCTCTTGTGATGTTTGTAGCGAAACTTTTGAACGGAAAAGTTTCTTGTATAAACATCTACAACAGACTCACACCGGAATTAAACCGTTTGCATGTAAGATTTGTGGTAAAACATTTCAAGCGAGACGATATCTACGTGGACATCGTCAAATTCATACCGAAAAAGAAACATTATTTTCATGTGATGTTTGTAATAAAACGTTCACGCTTAAACGCTATCTAGATCAACATAAACAATCTCATTCGGGTGAAAAAAATTTCTCTTGTGATATTTGTGGTCAAAGTTTTGGCCGGAAATATTACTTGGATCGGCATCTACAAATTCATACCGGAATTAAACCGTTTGAATGCGATATTTGTGATAAACGATTTTATCGATCTTGTTACTTAAAAAAACATAAACAAGCGCATACTGGGGAAAAACCTTATGTATGTGATATTTGTGGTAAAGCATTGAGTCGACCGTATAGTTTGGTTATACATAGAGCGATTCATACAGGAGAGAAACCATTTGCTTGTAAAGTTTGTAATAAAACATTTGTCGATCCAGGTAATTTAAATAAACATAATAAACGTGTTCACTTACTACAGGGTAGGCGAAAAGTCATTACCCAAATTAGTGACGATGTTTCCCTGATAAAAAAGTCGGATTCATGA
- Protein Sequence
- MSKDLNFDEKNLYISDELIKMEKELHSEIELVVKEEDAEENVSEEPQENQNENQFFSCDENQIFNSEIKLVNNKQILNQEKRFTCDVCDTKFARKNHLLEHNLIHSKEKNFSCDLCGRKFTRQSSLNRHKRQQHAEQEPFSSNIKEQGYTNEYYSEEPQENRNENQFLSCDENQIFNSEIKLVNNKQILNQEKRFTCDVCDTKFARKNHLLEHNLIHSKEKNFSCDLCGRKFTRQSSLNRHKRQQHAEQELFSSNIKEQGYTNEYFSEEPQENLNEKEGFSCDKDQTFYFSCDFCSKKFTRQSSLNRHNRQQHAEEEESFSLDIKNEVINSEPKQGFKNEQFSCDVCEKLFESEFNFVTHKRCHTDETFSCGDCEKAFTHLLEHQILKIEDKPFYIKVEKQFHMEIIRKEEIPEVKYENVSMELQQIHTDEKKYFSMELKQILTEEKHFSCNACEKMFTREIYLNQHKLTHSTEKDSMNSNITQNSCSRTLLAQHKRQHTDEKPFSCEICGKTFNLRSKLLQHREIHIEKEKSFSCDVCNKTFTFKRYLLQHIKRTHSRKKKFSCDVCSETFERKSFLYKHLQQTHTGIKPFACKICGKTFQARRYLRGHRQIHTEKETLFSCDVCNKTFTLKRYLDQHKQSHSGEKNFSCDICGQSFGRKYYLDRHLQIHTGIKPFECDICDKRFYRSCYLKKHKQAHTGEKPYVCDICGKALSRPYSLVIHRAIHTGEKPFACKVCNKTFVDPGNLNKHNKRVHLLQGRRKVITQISDDVSLIKKSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -