Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997756.1:88065239-88066891[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.2e-07 1.5e-05 25.5 1.4 1 20 122 141 122 144 0.94

2 15 3.5e-05 0.00075 20.2 2.4 1 23 150 172 150 172 0.98

3 15 3.2e-06 6.8e-05 23.5 0.1 1 23 178 200 178 200 0.98

4 15 0.00032 0.0069 17.2 1.6 2 23 207 228 206 228 0.95

5 15 2e-05 0.00043 21.0 1.6 1 23 234 256 234 256 0.99

6 15 0.00014 0.0031 18.3 0.8 1 23 262 284 262 284 0.98

7 15 2.3e-05 0.0005 20.8 1.5 1 23 290 312 290 312 0.98

8 15 0.00013 0.0027 18.4 0.0 1 23 318 340 318 340 0.97

9 15 0.00025 0.0054 17.5 1.2 1 23 346 368 346 368 0.98

10 15 0.0018 0.038 14.8 9.7 1 23 374 396 374 396 0.97

11 15 0.0025 0.054 14.4 1.0 1 23 402 424 402 424 0.98

12 15 7.6e-06 0.00016 22.3 3.2 1 23 430 452 430 452 0.98

13 15 1.7e-05 0.00037 21.2 2.6 1 23 458 480 458 480 0.98

14 15 0.00049 0.011 16.6 2.1 2 23 492 513 491 513 0.96

15 15 0.04 0.87 10.6 0.3 1 19 519 539 519 542 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.2e-07	1.5e-05	25.5	1.4	1	20	122	141	122	144	0.94
2	15	3.5e-05	0.00075	20.2	2.4	1	23	150	172	150	172	0.98
3	15	3.2e-06	6.8e-05	23.5	0.1	1	23	178	200	178	200	0.98
4	15	0.00032	0.0069	17.2	1.6	2	23	207	228	206	228	0.95
5	15	2e-05	0.00043	21.0	1.6	1	23	234	256	234	256	0.99
6	15	0.00014	0.0031	18.3	0.8	1	23	262	284	262	284	0.98
7	15	2.3e-05	0.0005	20.8	1.5	1	23	290	312	290	312	0.98
8	15	0.00013	0.0027	18.4	0.0	1	23	318	340	318	340	0.97
9	15	0.00025	0.0054	17.5	1.2	1	23	346	368	346	368	0.98
10	15	0.0018	0.038	14.8	9.7	1	23	374	396	374	396	0.97
11	15	0.0025	0.054	14.4	1.0	1	23	402	424	402	424	0.98
12	15	7.6e-06	0.00016	22.3	3.2	1	23	430	452	430	452	0.98
13	15	1.7e-05	0.00037	21.2	2.6	1	23	458	480	458	480	0.98
14	15	0.00049	0.011	16.6	2.1	2	23	492	513	491	513	0.96
15	15	0.04	0.87	10.6	0.3	1	19	519	539	519	542	0.92

Sequence Information

Coding Sequence: ATGTGCAAAGAATTTTATTCAAATAATGGTGAAATCGATGAAGATATTGATGAAAAACAAACAAAACTTGAACAAAAATTACATTCCGAATTAATTTTGGAGGATGAAGAATTGTTTTCAAGTAATGATGAGAATATTGATGATAAAGACATATTGAAAAAAATTAAAATTGAGAAAGAATTACATTCAGAATTAATTATAAAAGATGAAGATGAAATATCTGAACGAAGTGACTCAGAGAATAATGAAAAAAACTCAGAGAATAATGAAAATTTCACAACTACTGAGTCATTAATTGGTCACAAACGACGTAGCCACAATCGAAGCAAATTAGTTCGACAAGTTCAAACAAGGAAAAAAACTTATTCATGTAATATTTGTAATAAATCATTCAGCACAAGCTCAAATCTCACTAAGCATAAACCTATTCATACTGGAGAAAAACCATTTTCTTGTAATGTTTGTAAAAAATCATTTCGATATCAATCGAGTGTAATTGTTCATAAACGAAGACATACTGGAGAAAAACCATATTCATGTGAAGTGTGTGATAAAACATTCGTTAGTGCCGGTGATTTAATTGTACATAAACGAAGTCATACTAAGGAAAAACCGTGTGCATGTGATATTTGTGATAAAAAGTTCAAAGATATTTACTTATTAAATATACATAAACAAAGTCATTCCGGAGAAAAACCTTACAAATGTGATGTTTGTAATAAAGCATTCGTTTATAAAAGTTATGTTCGTCAACATAAACGAATCCATACAGAAGAAAAACGTTATTCATGTGAAATTTGTAATAAAAAATTTACTGCAAAAGGTAGCGTAATTAGACATAAATTAACTCATACAGAAGAAAAATCATATTCATGTAATATTTGTAATAAAAAATTTATAGAAAAAGGAAATTTTATTGTACATAAACGAAGACATACGGGAGAAAAACCATATGCATGTGAAAAGTGTGATAAAACATTCGTTAGTGCAGGTGATTTAATTGGACATAAATTAATTCATACCGAGGAAAAATCATATGTATGTGATGTTTGTGATAAAAAATTCAAATGGAAAAAAACATTAATTAATCACAAACGAATTCATACCGGAGAAAAACCTTACTCATGTGATGTTTGTAAGAAATCATTTACATTTAAAAGCCATTTATTCCATCATAAACATATACATACTAGAGAAAAACCATTTTCTTGTGAAATTTGTGATCAAAAATTTACTACGAATTTAATTTTATCGAGACATAAACGAGTTCATACAGCAGAAGAATATTTTAATTGTGATGTTTGTGGTAAAATATTTTTTTCTAAAAGTCATTTAACTACACATAAACGAATTCACACGGGTGAAAGACCTTATTCGTGTACAGTGTGTAATAAAAAATTTATACAAACAAGTTCCTTAAAAAAACATAAACAAATTCATACTAGGAATGGAGAAGAAATAGAAAAATCATTATCGTGTAATATATGTAATAAAAAATTGAGTAAAAAAATTAATTTAATGAAACATAAACGACTTCATACTAAACAAACACCATATGCGTGTGAACGTGAAGATTGCGACCAAATATTTACAAATAAACAGGAATTGTATGATCATGAACATCAAAATGTTCTTATTTTAATTAATAAATAA
Protein Sequence: MCKEFYSNNGEIDEDIDEKQTKLEQKLHSELILEDEELFSSNDENIDDKDILKKIKIEKELHSELIIKDEDEISERSDSENNEKNSENNENFTTTESLIGHKRRSHNRSKLVRQVQTRKKTYSCNICNKSFSTSSNLTKHKPIHTGEKPFSCNVCKKSFRYQSSVIVHKRRHTGEKPYSCEVCDKTFVSAGDLIVHKRSHTKEKPCACDICDKKFKDIYLLNIHKQSHSGEKPYKCDVCNKAFVYKSYVRQHKRIHTEEKRYSCEICNKKFTAKGSVIRHKLTHTEEKSYSCNICNKKFIEKGNFIVHKRRHTGEKPYACEKCDKTFVSAGDLIGHKLIHTEEKSYVCDVCDKKFKWKKTLINHKRIHTGEKPYSCDVCKKSFTFKSHLFHHKHIHTREKPFSCEICDQKFTTNLILSRHKRVHTAEEYFNCDVCGKIFFSKSHLTTHKRIHTGERPYSCTVCNKKFIQTSSLKKHKQIHTRNGEEIEKSLSCNICNKKLSKKINLMKHKRLHTKQTPYACEREDCDQIFTNKQELYDHEHQNVLILINK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -