Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997759.1:20545984-20550977[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0013 0.029 15.2 0.5 1 23 562 584 562 584 0.98

2 18 4.6e-05 0.001 19.8 1.1 1 23 590 612 590 612 0.98

3 18 0.00092 0.02 15.7 0.8 1 20 619 638 619 640 0.95

4 18 0.0014 0.03 15.1 1.0 1 23 647 670 647 670 0.94

5 18 0.00039 0.0084 16.9 1.3 1 23 671 693 671 693 0.97

6 18 5.9e-05 0.0013 19.5 1.7 1 23 728 750 728 750 0.98

7 18 0.00017 0.0036 18.0 0.8 1 23 756 778 756 778 0.98

8 18 0.00043 0.0092 16.8 0.1 1 23 784 806 784 806 0.98

9 18 2.8e-05 0.0006 20.5 0.5 1 23 812 834 812 834 0.97

10 18 1.7e-05 0.00036 21.2 1.0 1 23 840 863 840 863 0.97

11 18 0.0023 0.049 14.5 2.1 1 23 869 891 869 891 0.96

12 18 0.0048 0.1 13.5 5.5 1 23 897 920 897 920 0.96

13 18 0.0028 0.061 14.2 1.1 1 23 925 948 925 948 0.97

14 18 8.9e-05 0.0019 18.9 2.2 1 23 956 978 956 978 0.97

15 18 2.4e-05 0.00052 20.7 2.0 1 23 984 1006 984 1006 0.98

16 18 0.00023 0.005 17.6 1.9 1 23 1012 1034 1012 1034 0.98

17 18 2.7e-05 0.00059 20.5 2.6 1 23 1042 1064 1042 1064 0.98

18 18 0.03 0.65 10.9 2.5 1 23 1070 1094 1070 1094 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0013	0.029	15.2	0.5	1	23	562	584	562	584	0.98
2	18	4.6e-05	0.001	19.8	1.1	1	23	590	612	590	612	0.98
3	18	0.00092	0.02	15.7	0.8	1	20	619	638	619	640	0.95
4	18	0.0014	0.03	15.1	1.0	1	23	647	670	647	670	0.94
5	18	0.00039	0.0084	16.9	1.3	1	23	671	693	671	693	0.97
6	18	5.9e-05	0.0013	19.5	1.7	1	23	728	750	728	750	0.98
7	18	0.00017	0.0036	18.0	0.8	1	23	756	778	756	778	0.98
8	18	0.00043	0.0092	16.8	0.1	1	23	784	806	784	806	0.98
9	18	2.8e-05	0.0006	20.5	0.5	1	23	812	834	812	834	0.97
10	18	1.7e-05	0.00036	21.2	1.0	1	23	840	863	840	863	0.97
11	18	0.0023	0.049	14.5	2.1	1	23	869	891	869	891	0.96
12	18	0.0048	0.1	13.5	5.5	1	23	897	920	897	920	0.96
13	18	0.0028	0.061	14.2	1.1	1	23	925	948	925	948	0.97
14	18	8.9e-05	0.0019	18.9	2.2	1	23	956	978	956	978	0.97
15	18	2.4e-05	0.00052	20.7	2.0	1	23	984	1006	984	1006	0.98
16	18	0.00023	0.005	17.6	1.9	1	23	1012	1034	1012	1034	0.98
17	18	2.7e-05	0.00059	20.5	2.6	1	23	1042	1064	1042	1064	0.98
18	18	0.03	0.65	10.9	2.5	1	23	1070	1094	1070	1094	0.92

Sequence Information

Coding Sequence: ATGAAAATCAATAAAGATGAAAGTATTGAAAATCAAAAATGCAATTCAGAAATATTACAGACAAAAGAAAATAATTCGATGGAGCTTCAAACAGCAATCGAGCATCAATCTAGTTTGGTAATCAAAAATGTAGAGATTGGAATTGATCAAAACTCACATATTGAAGTATTGAAAAAATATGATCAAGATATTGTTGAAACATTAGAAAAATTTGATAAAGATAATGCTGACACATTAGAAAAATTTGACGAGGGTAATGTTAAAACATTAGAAAGATTTTACGAGGATAATGCTGAAACATTTGAAAAACCTGTAAAAAATGAAGAATTTGTTGAACCGTTTGCTGCTGAAATATTGCAAAAATATGATCAAGAAGACATTGTTGAAACATTAGAAAAATTTGATGAAGATAATGCTGAAAAATTAGAAAGATTTGATGAAGATAATGCTGAAATATTAGAAAAATTTGACGAGGATAATGTTAAAAGTTTAGAAAAATTTGATGATAATAATGCTGAAAAATTAGAAAGATTTGATGAAGATAATGCTGAAATATTAGAAAAATTTGACGAGGATAATGTTAAAAGTTTAGAAAAATTTGATGATAATAATGCTGAAAAATTAGAAAGATTTGATGAAGATAATGCTGAAATATTAGAAAAATTTGACGAGGATAATGTTAAAAGTTTAGAAAAATTTGATGATAATAATGCTGAAAAATTAGAAAGATTTGATGAAGATAATGCTGAAATATTAGAAAAATTTGACGAGGATAATGTTAAAAGTTTAGAAAAATTTGATGATAATAATGCTGAAAAATTAGAAAGATTTGATGAAGATAATGCTGAAATATTAGAAAAATTTGATCAAGAAGATATTGTTGAAACATTAGACAAATTTGATGAAGATAATGTTGAAAAATTAGAAAAATTTGATGAAGATCATGCTGAAACATTAGAAAAACCTGTAATCAAAGAGGTGCGGATTAAGATTGAACGAAATTTACAAATTGAATTAATGATCAAAAATAAATATTTAACTCAAAGATTACAAGAATCTGATGAAGATAATGCTGAAAAATTTGAAGATTCAGATGAAAATGGAGATATTTTTGAACCGTTTGAAGCATCTTCTGAAGATGAATATGTTCCTGAGACATCAGAATCAGAAGAATCTGACGAAGATGAATACGATGATGTAAAATCAAACGATATTTATTTTCAGTGTAAACGAATTTATTCTGGAGATGAAAGTGATTTAGAAGAAAATAAACACATTAATGAGAATAATCCTTTGGAGATAAAGAATAAACGAATTCGTATTGAAGGAAATGAAGATGTTTCAGAAGAAAATCAAGGTACTAAAGAAAATGATGATTTATTAAACAAAGAAAATGAATTAAATACAAAATTAATTAATAAAGAAGAATTAAAATTAATAGCAAATGATTCAATAGATCAACAAATTTATCTGAATAGTTCTTTGATAATCAAAGATGTACGCATTAAAATTGAACGAAATTTACACACAGAATTAATGATTAAAGATGAATATGACACCGAAACATTCGAAGAGTTTAATGAAATTAAAGCTGGAATATTAGAAGAATCAGATGCATCTAATAACGATTTTACTCATGAGCATAGTTTGGTTCGTAAAACTCTTCGTACAGAAGAAAAACATTTCGTTTGTGATGTATGTGATAGATTGTTTCTTTCAAAATCTAGTTTATTACGACATCAACGAGGTCATATTGGAGGAAGCTCTTATTCATGTGAAGTTTGTGATAAAGATTTTTTCGTAAAAAAGAATTTAATAAGGCACAAACGAATTCATACCGGAGAAATTAAAACATATTCGTGCGATATTTGTGAGAAAATATTTACCAAAAAAAGAAACTTCGCTAAACATAAAGAAAATAATGTGTGCGTAGCACGTTTTATATGTCGTGAGTGTAATGAAAGATTTTCCGACAGACAGGATTTGGTTAAACATAATCGAGAAAAACATTTTTATTGTGATCTTTGTGATAAAAGTTTTGGTTATAAAGACAGTATGGAGAAACATACGCAACTTCATAGCGAAGGGAAAAATTTTGTTTGTCAGATTTGTTGTAAAGCATTTGTCTGTGAAAGATATCTCGATAAACATAAAGAAACTCATACTGACCGGAAAAAACGTTATTCATGCGACATTTGTGACAAAACTTTTGTCCAAAAACACAGTTTAGATGATCACAAACAAGTTCATACCGGTGAAAAGCCATATTCTTGTAATGTTTGTGATAAAGTATTTGCGTTACGACAATATCTAAAACTCCATGAAAAGACTCATACTGGGGAAAAAAGTTATTCATGTGGCGTTTGTGGTAAAGCTTTTCTCCAAAAACCTAGCTTAATTAGACACGAACGAGTTCATACCGGAGAAAAGCCATATTCTTGTGAGGTTTGTGAGAGAAAATTTTCTGATAAAGGTGATTTAACTAAACATAAAATAATTCATACTGGAGAAAAGCCTTTTTCATGCGATATTTGTGATCGAAAATTTTCAAGAAAAGGTTTATTAAATGATCATAAACGAAATGTGCATTCGACAGAGAAACCTTTCGCATGTAATTTATGCGATAAAAAATTTTCAAGAAAGGGTTTATTAAGTTTTCATAAACGAATGCATACAGAAGGGAAAAGATTTGAATGTGATGCTTGTGATAAAAAATTCAAATATAAAAGTAATTTAGGTCATCATCATAAACTTTACCATAGCGGAAAATATTTTTCGTGTGATGTTTGTAACAAACCATTTTTAACTGAAGACTCTTTAAATCGCCATAATCGAAAATACCATTCTAAGAAAATTCCAAAAATATTTGCATGTGATGTATGTGATAAGAAATTTCAAAATTCATCGGATTTTACTTATCACAAACGAACTCATACAGGAGAGAGGCCATTTGAATGTGATCTCTGTGATAAAAAATTTATAGTGAATTCTCATTTAATTCGTCATAAACGTTTGCATAGTGGAGAAAAACGTTTTGAGTGTGATGTTTGTAATAAAACGTTTTTTTTCAGTTTTAATTTAGTTTCACATAAACGAGTTCATTTAAAAAAACGAGTAAAACCTTTTAAGTGTGATGTTTGTAAGATGAAATTCACCGATAAAAGTACGTTAAAGAGACACAAACTAATTCATACAGGAGAGAAACGTTTTTCCTGCAATGTTTGTAATTTTAAATTTTTACGGTCGGATACTTTAAAACAACATCAACTAACAAAAAATCATTGTAATTTATAA
Protein Sequence: MKINKDESIENQKCNSEILQTKENNSMELQTAIEHQSSLVIKNVEIGIDQNSHIEVLKKYDQDIVETLEKFDKDNADTLEKFDEGNVKTLERFYEDNAETFEKPVKNEEFVEPFAAEILQKYDQEDIVETLEKFDEDNAEKLERFDEDNAEILEKFDEDNVKSLEKFDDNNAEKLERFDEDNAEILEKFDEDNVKSLEKFDDNNAEKLERFDEDNAEILEKFDEDNVKSLEKFDDNNAEKLERFDEDNAEILEKFDEDNVKSLEKFDDNNAEKLERFDEDNAEILEKFDQEDIVETLDKFDEDNVEKLEKFDEDHAETLEKPVIKEVRIKIERNLQIELMIKNKYLTQRLQESDEDNAEKFEDSDENGDIFEPFEASSEDEYVPETSESEESDEDEYDDVKSNDIYFQCKRIYSGDESDLEENKHINENNPLEIKNKRIRIEGNEDVSEENQGTKENDDLLNKENELNTKLINKEELKLIANDSIDQQIYLNSSLIIKDVRIKIERNLHTELMIKDEYDTETFEEFNEIKAGILEESDASNNDFTHEHSLVRKTLRTEEKHFVCDVCDRLFLSKSSLLRHQRGHIGGSSYSCEVCDKDFFVKKNLIRHKRIHTGEIKTYSCDICEKIFTKKRNFAKHKENNVCVARFICRECNERFSDRQDLVKHNREKHFYCDLCDKSFGYKDSMEKHTQLHSEGKNFVCQICCKAFVCERYLDKHKETHTDRKKRYSCDICDKTFVQKHSLDDHKQVHTGEKPYSCNVCDKVFALRQYLKLHEKTHTGEKSYSCGVCGKAFLQKPSLIRHERVHTGEKPYSCEVCERKFSDKGDLTKHKIIHTGEKPFSCDICDRKFSRKGLLNDHKRNVHSTEKPFACNLCDKKFSRKGLLSFHKRMHTEGKRFECDACDKKFKYKSNLGHHHKLYHSGKYFSCDVCNKPFLTEDSLNRHNRKYHSKKIPKIFACDVCDKKFQNSSDFTYHKRTHTGERPFECDLCDKKFIVNSHLIRHKRLHSGEKRFECDVCNKTFFFSFNLVSHKRVHLKKRVKPFKCDVCKMKFTDKSTLKRHKLIHTGEKRFSCNVCNFKFLRSDTLKQHQLTKNHCNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -