Ccar019343.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:4689603-4696077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6e-05 0.0013 19.5 1.1 1 23 124 146 124 146 0.98 2 15 1.1e-05 0.00023 21.8 1.8 1 23 152 174 152 174 0.98 3 15 0.012 0.26 12.2 0.6 1 18 180 197 180 197 0.93 4 15 5.2e-06 0.00011 22.8 3.8 1 23 273 295 273 295 0.98 5 15 0.00038 0.0081 16.9 2.8 1 23 301 323 301 323 0.97 6 15 1.8e-05 0.00038 21.1 6.7 1 23 329 351 329 351 0.97 7 15 0.001 0.022 15.6 1.1 1 23 357 379 357 379 0.98 8 15 5.6e-06 0.00012 22.7 1.1 1 23 385 407 385 407 0.98 9 15 0.0097 0.21 12.5 0.9 1 23 413 435 413 435 0.97 10 15 5.8e-06 0.00012 22.6 2.8 1 23 441 463 441 463 0.98 11 15 1.1e-06 2.4e-05 24.9 1.0 1 23 469 491 469 491 0.98 12 15 7.1e-06 0.00015 22.4 0.3 1 23 497 519 497 519 0.98 13 15 0.0016 0.035 15.0 0.6 1 23 525 547 525 547 0.98 14 15 1.4e-05 0.0003 21.4 4.2 1 23 553 575 553 575 0.98 15 15 1.4e-06 3e-05 24.6 1.7 1 23 581 603 581 603 0.98
Sequence Information
- Coding Sequence
- ATGGCGAATAATTCATTTCAAAACGTAAATAGTGATTTATTTATTAGTGAAGAACAATTAAATAAACACGAATTAAATACAGAAGTGATTATTAAAAATGAAATATTTGATGTGAGTGAAAGTGATTCAATAAAATATGAAGAACCATTCAAAGGTGAACACGAAGGAATTAAAGAAGAAGGCTTACTTGAAGAAACTGATATTAAGATCGAGAATGAACGAATTATTTTAAATGATCCATTATTAAATACTGAATTTCCTATTAAAAATGAAACATTTGATGGAAATGATTTAGAATTTCATACGATTAAAAATGAAGAAACATCTTTGACGTATGAAGTGTGTGATAAAACTTTAAAAAAAAAACGTTTTTCATGTAAAGTGTGTGATAAATTATTTAATAAAAACCGTGACTTAATTCGACATGAACGAATTCATACTGGAGAAAAACCTTATTCATGTGAAGTGTGTGATAAAAGATTTAATATAAAAAGTACTTTAACTAAGCACAAACGAATTCATACCGGTGAAAAACGTTTTACATGTAAAGTGTGTGATAAATCATTGACTCAAAAAGACAGTTTAAGCCGAATCTATACAAAACAAAGTAAACTTTGTCCGCCCAGAGCCCGCCACGGTGAAGATGGGCCTAAATGGCAACTAGGTCCACTTGTATGCGATAGAGCAGCGTCAACGCTACGCATTTCATATCCACCTCGTTTCGTTAAGCTTGTCCTCTTCCCCTCATTAAATTTGGACACTAACGACAGAACACCCTTAATTCAACATGAACGAATTCATACAGGTGAAAAACCGTTTTCATGTGTAATGTGTGATAAAACATTTTCGCGGAAATCTCATTTAATTCTACATAAACAAACTCATACTGGGGAGAAACCATTTTCGTGTGAAGTGTGTGATAAATCATTTTGTTATAAATACGTTTTAAATCAACATAAAATAATTCATACGGGTAAAAAACCTTTTGCATGTGAAGTGTGTGATAAAACTTTTAATAAAAGACATCATTTAACTAGACATAAACGAACTCATACTGGGGAAAAACCATTTTCTTGTGAATTTTGTGATAAATCATTTAATTATAAAAACGTTTTAATTGGACATAAACGAATTCATACCGGTGAAAAACCGTTTTCATGTGAAATGTGTGATAAATCATTTACTCAAAAAAACAGTTTAATTTATCATGAACGAATTCATGCTGGTGAAAAACCGTTTTCATGTGAAATATGTGATAAAAGATTTATGTTGAAAAGTATTTTAATTCAACATAAACAAAGTCATACTGGTGAAAAACCATTTTCATGTGAAATGTGTGATAAAAAATTTACGGTGAAAAGTCATTTAATTCAACATGAACGAATGCATACTGGTGAAAAACCATTTTCATGTGAATTATGTGATAAAACATTTTCGCAGAAAGGTAGTTTAAATGTACATAAACGAATTCATACCGGTGAAAAACGTTTTTCATGTGAAATGTGTGACAAAATATTTACTCAAAAAATCAGTTTAATTGCACATGAACGAATGCATACTGGTGAAAAACCGTTTTCATGTGAAATATGTGATAAAACATTTATGTTGAAAAGTATTTTAATTCAACATAAACGAATTCATAGTGGGGAAAAACCATTTTCATGTGAAATGTGTGATAAAAAATTTACGCAGCGATGTAATTTAATTCAACATGAACGAACTCATACTGGGGAAAAACGATTTTCATGTGAAGTGTGTGATAGAACATTTGCGCAGAAAAGTAATTTAAATTATCATAAACGATCTCATACTGGAGAAAAACCCTTTTCCAGTAAAGTGTGA
- Protein Sequence
- MANNSFQNVNSDLFISEEQLNKHELNTEVIIKNEIFDVSESDSIKYEEPFKGEHEGIKEEGLLEETDIKIENERIILNDPLLNTEFPIKNETFDGNDLEFHTIKNEETSLTYEVCDKTLKKKRFSCKVCDKLFNKNRDLIRHERIHTGEKPYSCEVCDKRFNIKSTLTKHKRIHTGEKRFTCKVCDKSLTQKDSLSRIYTKQSKLCPPRARHGEDGPKWQLGPLVCDRAASTLRISYPPRFVKLVLFPSLNLDTNDRTPLIQHERIHTGEKPFSCVMCDKTFSRKSHLILHKQTHTGEKPFSCEVCDKSFCYKYVLNQHKIIHTGKKPFACEVCDKTFNKRHHLTRHKRTHTGEKPFSCEFCDKSFNYKNVLIGHKRIHTGEKPFSCEMCDKSFTQKNSLIYHERIHAGEKPFSCEICDKRFMLKSILIQHKQSHTGEKPFSCEMCDKKFTVKSHLIQHERMHTGEKPFSCELCDKTFSQKGSLNVHKRIHTGEKRFSCEMCDKIFTQKISLIAHERMHTGEKPFSCEICDKTFMLKSILIQHKRIHSGEKPFSCEMCDKKFTQRCNLIQHERTHTGEKRFSCEVCDRTFAQKSNLNYHKRSHTGEKPFSSKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -