Ccar016289.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:9989022-9990542[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.3e-06 4.9e-05 23.9 1.7 1 23 112 134 112 134 0.98 2 14 9.8e-05 0.0021 18.8 2.4 1 23 140 162 140 162 0.98 3 14 2.4e-06 5.1e-05 23.9 1.7 1 23 168 190 168 190 0.97 4 14 0.0035 0.077 13.9 5.4 1 23 196 218 196 218 0.98 5 14 8.9e-06 0.00019 22.1 0.9 1 23 224 246 224 246 0.98 6 14 7.6e-06 0.00016 22.3 0.9 1 23 252 274 252 274 0.98 7 14 0.00086 0.019 15.8 6.7 1 23 283 305 283 305 0.98 8 14 8.9e-06 0.00019 22.1 0.9 1 23 311 333 311 333 0.98 9 14 7.6e-06 0.00016 22.3 0.9 1 23 339 361 339 361 0.98 10 14 0.00046 0.0099 16.7 6.4 1 23 370 392 370 392 0.98 11 14 8.4e-05 0.0018 19.0 0.4 1 23 398 420 398 420 0.98 12 14 1e-05 0.00022 21.9 3.6 1 23 426 448 426 448 0.98 13 14 3.8e-07 8.3e-06 26.4 0.8 1 23 454 476 454 476 0.98 14 14 0.00026 0.0057 17.4 3.3 1 23 482 504 482 504 0.98
Sequence Information
- Coding Sequence
- ATGGCAAATAATTCATTTGTTGATACAAATAATTATTTGTTTATTAATAAAGATAATATTAAAGTTGAAAAAGAATTACATACTGAACTAATTATTAAAAATGAAATATTAGATGAAACTATTTTAATGGAAGGTGGACAAATTACAAATAAAGAAGAAGGCAGCAATGATAGTGATAGTGTTGTGAGTGTAAAACATGAACTTGTGAGTGATGAAAATGATAAACAATTGTACACAATTAATTATGAAAATATTAAACTTGAAAAAGAATTACATACAGAACTAATTATTAAAGATGAAATATTAGATGAAACTGATTTAGAAGAAAAACCATTTGTATGTGATACTTGTAATAAAACATTTAATGAGAAAAGTAATTTAGTTAAACATAAACGCATTCATGGTGGAGAAAAGCCATTTTCATGTGATGTTTGTAATCAAAGATGTACTACATCATCGAATTTAGTTGAACATAAACGTATTCACACCGGAGAGAAACCATTTGCATGTGATATTTGTAATAAACGATTTACTCGGCGAACTTCCTTAGTTAGACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGAAAGTTGTAATAAAACATTTACTCTACAACATCATTTAGTTTTACATAAAAAGATTCATAGTGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTGATAAAAGTGTTTTAGTTTCACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAGGTGTTTTAGTTAGACATAAACGTATTCACACCGGAGCGAAACCATTGAAACCATTTTCATGTGAAAGTTGTAATAAAACATTTACTCACCGACATTATTTAGTTTCACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTGATAAAAGTGTTTTAGTTTCACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCAGAAAGGTGTTTTAGTTAGACATAAACGTATTCACACCGGAGCGAAACCATTGAAACCATTTTCATGTGAAAGTTGTAATAAAACATTTACTCACCAACATTATTTAGTTTCACATAAACGAATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTTGGCAAAGTGATTTAGTTGTACATAAACGTATTCACAGCGGAGAAAAGCCATTTTCATGTGATATTTGTAATAAAAGATTTACTTCATCAACGCATTTAGTTACACATAAACGTATTCACAGCGGAGAAAAACCATTTCCATGTGATGTTTGTAATAAATCATTTACTCAGAAAGGTCAATTAGTTAGACATAAGCGTATTCACACCGGAGAGAAACCATTTTCATGTGAAATTTGTAATAAAACATTTACTCAACAAAATTGTGTAGTTCAACATAAACGTATTCACAATCGATAA
- Protein Sequence
- MANNSFVDTNNYLFINKDNIKVEKELHTELIIKNEILDETILMEGGQITNKEEGSNDSDSVVSVKHELVSDENDKQLYTINYENIKLEKELHTELIIKDEILDETDLEEKPFVCDTCNKTFNEKSNLVKHKRIHGGEKPFSCDVCNQRCTTSSNLVEHKRIHTGEKPFACDICNKRFTRRTSLVRHKRIHTGEKPFSCESCNKTFTLQHHLVLHKKIHSGEKPFSCDVCNKTFTDKSVLVSHKRIHTGEKPFSCDVCNKTFTQKGVLVRHKRIHTGAKPLKPFSCESCNKTFTHRHYLVSHKRIHTGEKPFSCDVCNKTFTDKSVLVSHKRIHTGEKPFSCDVCNKTFTQKGVLVRHKRIHTGAKPLKPFSCESCNKTFTHQHYLVSHKRIHTGEKPFSCDVCNKTFTWQSDLVVHKRIHSGEKPFSCDICNKRFTSSTHLVTHKRIHSGEKPFPCDVCNKSFTQKGQLVRHKRIHTGEKPFSCEICNKTFTQQNCVVQHKRIHNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -