Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997757.1:1498697-1502385[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2e-06 4.2e-05 24.1 0.5 1 23 128 150 128 150 0.98

2 15 3.9e-05 0.00085 20.0 3.2 1 23 170 192 170 192 0.99

3 15 0.0085 0.18 12.7 1.8 1 23 198 220 198 220 0.96

4 15 1.8e-06 3.8e-05 24.3 0.5 1 23 229 251 229 251 0.98

5 15 3.6e-06 7.9e-05 23.3 1.8 1 23 257 280 257 280 0.97

6 15 0.0015 0.033 15.0 0.2 1 23 288 310 288 310 0.98

7 15 5.8e-06 0.00013 22.6 7.3 1 23 316 338 316 338 0.98

8 15 0.00022 0.0047 17.7 0.4 1 23 344 366 344 366 0.93

9 15 1.8e-05 0.00039 21.1 4.6 1 23 372 394 372 394 0.99

10 15 4.3e-05 0.00092 19.9 0.8 1 23 398 420 398 420 0.97

11 15 3.9 85 4.3 3.1 2 23 427 447 426 447 0.94

12 15 2e-07 4.3e-06 27.3 3.8 1 23 453 475 453 475 0.98

13 15 3.2e-05 0.00068 20.3 0.2 1 23 481 503 481 503 0.98

14 15 0.00013 0.0027 18.4 2.0 1 23 509 531 509 531 0.97

15 15 0.00038 0.0083 16.9 5.1 1 23 535 557 535 557 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2e-06	4.2e-05	24.1	0.5	1	23	128	150	128	150	0.98
2	15	3.9e-05	0.00085	20.0	3.2	1	23	170	192	170	192	0.99
3	15	0.0085	0.18	12.7	1.8	1	23	198	220	198	220	0.96
4	15	1.8e-06	3.8e-05	24.3	0.5	1	23	229	251	229	251	0.98
5	15	3.6e-06	7.9e-05	23.3	1.8	1	23	257	280	257	280	0.97
6	15	0.0015	0.033	15.0	0.2	1	23	288	310	288	310	0.98
7	15	5.8e-06	0.00013	22.6	7.3	1	23	316	338	316	338	0.98
8	15	0.00022	0.0047	17.7	0.4	1	23	344	366	344	366	0.93
9	15	1.8e-05	0.00039	21.1	4.6	1	23	372	394	372	394	0.99
10	15	4.3e-05	0.00092	19.9	0.8	1	23	398	420	398	420	0.97
11	15	3.9	85	4.3	3.1	2	23	427	447	426	447	0.94
12	15	2e-07	4.3e-06	27.3	3.8	1	23	453	475	453	475	0.98
13	15	3.2e-05	0.00068	20.3	0.2	1	23	481	503	481	503	0.98
14	15	0.00013	0.0027	18.4	2.0	1	23	509	531	509	531	0.97
15	15	0.00038	0.0083	16.9	5.1	1	23	535	557	535	557	0.98

Sequence Information

Coding Sequence: ATGGGGGAAATATTTAATGGAAGTGAAATCATTAGTACTGAAGATAAAACGTTCGAAGAAAGTAAAAATGTTCCAATGGTTCCTGCAAATGATAATTTTTTAATTAAAAGTGAATCATCATTACACACGGAATTAATAATAAAAGAAGATTTAGAAACTTCGAATAATTTTGAAGATGATGAACAAATAATTGATTTTAAAGAAATTAAACCATATTTTAAAGAAAATTTGCGAATTAAAAATGAAAAATCGTTACACACGGAATTAATAATAAAGGATGAAGATAGTGATAGTGAAAGTGAAACATCAGACGATTCTTATAATCCGAATAGTGATGAAAGTGATGTAATTAGTTCGAAACGTCAGCGCCCTAAAAAATCGTTTAATTGTGATGTATGTGATAAAAAATTTCCTCAGAAAAGTGCTTTAACCGTACATAAACGTGTTCATACCGGAGAAAAACCTGGTGATGTGATTAGTTCGAAACGTCAGCGCATTAAAAAAACGTATTATTGTGATGTATGTGATAAAAAATTTCCTCAGAAAAGTTGTTTAGACATACATAAACGTACACATACCGGTGAAAGACCATTTTCTTGTGAAATATGCGATAGAAAATTTCTTACCCGTCAAAATTTATCTAATCATAAATTCATTCATACTGGTGAAAAACAACCCAGACCATTTTCATGTGATGTTTGTGATAAAAATTTTACAAAACCATCAGCTTTAGTTCGACATAAACGTGTTCATACCGGAGAAAAACCATTTTCTTGTGAAATATGTAATAAAAGATTTACACAACGTGGTTCATTAAAAGAACATAAACGAATGATGCATGGAACAGGAGGAGAAAAACCTTATTCATGTGTAATTTGTAATCAAGGATTTAATGAAGAAAATGATTTAATTCAACATAAACGTATGCATCCCAAAGAAAAACATTTTGTGTGTGAAATTTGTAGTAAAACATTTTCTCGACGATGTCATTTGAATCGACATCAAAAAACACATAGTGGAGAAAAACCATTTTCTTGTATACTTTGTGATAAAGCATTTAAAGAAAAAAGTGATTTAATTAAACATGAACGTATTCATACCGGAGAAAAACCATTTACATGTGAAGTTTGTGATAAAAGATTTTCTCAGAACTGTTATTTAACTATACATAAACGAACACATGAAAAACAATTTTCATGTGAAGTTTGCAATAAAGGTTTTAAAGAAAAAACAAATTTATTAAAACATGAACAAATTCATAAAAGAGAAAAATATTTGACTTGTGAAGTTTGTAATAAAAAATTGCTCCGGTGTAATTTAATTAAACATAAACAATTGCATACAGGGGAAAAACCATTTCCATGTGATGTTTGTAATAAGACATTTTCTCGACAAGAACATTTGAATCGACATAAACGAACACATACAGGAGAAAAACCATTTTCTTGTCTACTTTGCAATAAAGCATTTGCTGATAAAGGTGATTTAAGTAAACATGAACGAATACATACCGGACAAAAACCGCATTCTTGTGATATTTGTAATAAAAGATTTCCACGGAAAGGTCTAGTAAATACACATAAACGTGTACATGAAAAACAGTTTTCATGTGAAATTTGTCGTAGATCGTATACTCAAAAACATCGTTTAAATCGACATAAACGAATACACATAACTAGTACTGTAGGAAACGAAGCATTTGACTAA
Protein Sequence: MGEIFNGSEIISTEDKTFEESKNVPMVPANDNFLIKSESSLHTELIIKEDLETSNNFEDDEQIIDFKEIKPYFKENLRIKNEKSLHTELIIKDEDSDSESETSDDSYNPNSDESDVISSKRQRPKKSFNCDVCDKKFPQKSALTVHKRVHTGEKPGDVISSKRQRIKKTYYCDVCDKKFPQKSCLDIHKRTHTGERPFSCEICDRKFLTRQNLSNHKFIHTGEKQPRPFSCDVCDKNFTKPSALVRHKRVHTGEKPFSCEICNKRFTQRGSLKEHKRMMHGTGGEKPYSCVICNQGFNEENDLIQHKRMHPKEKHFVCEICSKTFSRRCHLNRHQKTHSGEKPFSCILCDKAFKEKSDLIKHERIHTGEKPFTCEVCDKRFSQNCYLTIHKRTHEKQFSCEVCNKGFKEKTNLLKHEQIHKREKYLTCEVCNKKLLRCNLIKHKQLHTGEKPFPCDVCNKTFSRQEHLNRHKRTHTGEKPFSCLLCNKAFADKGDLSKHERIHTGQKPHSCDICNKRFPRKGLVNTHKRVHEKQFSCEICRRSYTQKHRLNRHKRIHITSTVGNEAFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -