Ccar009649.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:95880605-95882173[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00019 0.004 17.9 1.4 1 23 108 130 108 130 0.95 2 14 1.3e-07 2.9e-06 27.8 1.0 2 23 137 158 136 158 0.97 3 14 3.4e-06 7.4e-05 23.4 1.9 1 23 164 186 164 186 0.98 4 14 5.1e-05 0.0011 19.7 0.8 1 23 192 214 192 214 0.97 5 14 0.0015 0.032 15.1 0.5 2 23 221 242 220 242 0.97 6 14 3.5e-06 7.6e-05 23.3 1.5 1 23 257 279 257 279 0.97 7 14 2.8e-05 0.00061 20.5 5.0 1 23 285 307 285 307 0.98 8 14 1.2e-05 0.00025 21.7 2.2 1 23 313 335 313 335 0.98 9 14 2.6e-05 0.00057 20.6 0.7 1 23 341 363 341 363 0.95 10 14 8.1e-06 0.00017 22.2 1.5 1 23 380 402 380 402 0.98 11 14 3.8e-05 0.00082 20.1 2.1 1 23 408 430 408 430 0.98 12 14 0.00057 0.012 16.4 1.8 1 23 436 458 436 458 0.98 13 14 6.4e-06 0.00014 22.5 1.5 1 23 464 486 464 486 0.96 14 14 1.7e-05 0.00036 21.2 1.7 1 23 492 515 492 515 0.94
Sequence Information
- Coding Sequence
- ATGGAATTTGAAAAACAATTAAATAAAGAATTTATTATTAAAGATGAAATATTTAAAGAAACTGTTTATGAAATAGAACATGTATCAATTAAAGAAGAAATACCAGAAGAAACTGTTAAAATAGAAAATGTATTTATTAAAGAAGAAATATTAGAAGAACCTGTTAAAATTAAAGAGGAAGAAAATCATTTGAATGACTCAATCACAGAATATGAAGATATTAAACTTGAACAACAATTAAATACAGAACTTATAATTAAAGACGAAATTTTGAATGAAAATCTTTTAGAACATCAACAAACTGATATCGAAGACAAACATTTTTCATGTAAAATTTGTGGTAAAACGTTTATTCTAAAAGAAGATTTTTTTAAGCATGAGTTCATTCACACTCGGGGAAAAAGTTTATCGTGTGAAATTTGTAATAAAACATTTAGTGATAGAAGTAATTTAATTAGACATAAACGGATTCATACCGGACAAAAACCATTTACATGTGAGGTTTGTGAAAAAAAATTTAATCAGAAAAGTGATTTAAACCTACATAAACGAATGCATACTGGAGAAAAACCATTTAATTGTGAAGTTTGTGATAAGAAATTTACACGGAAAAGAGGTTTACTTATCCATAAACTCATTCATACGGGAGAAAAACCATTAACATGTGAATTTTGTGAGAAAATTTTTTTCCAGATACAAGCTTTAAATAGACATTTAAAAATACATACTGGAGAAAAACGAACTATTTGTGAAGTTTCTGATAAGGAATTTACTTGTGACGTTTGTGATAAGAAATTTACTCAGAAATCTAGTTTAATTCAACATAAACTACTTCATAGTGGAGACAAAAAGTTTTCATGTGAGTTTTGTGACAAAAAATTTTCCCAGATGCAACATTTAAATAGACATCGAAGAATACATACAGGAGAAAAACCATATTCTTGTGAGTTTTGTGATAAAAAATTTACTGATCATAGCAATTTAGTTGTTCATGAACGACTTCATAAAGGAGAAAAACCTTTTTCTTGTGAAGTTTGTGATAAAAAATTTAGTCAAAAAATCAATTTAACTTTACATAAAGGTATTCATTTTTGTGAAAAACCTTTGAATGTGAAATCTGAAACTGTTAGTGAACAATTTCCTTGTGATATTTGTAAAAAAATATTTTATCAGCAACAGAATTTATCTAAACATAAAAGGATTCATATTGGCGAAAATCCATTTACATGTGAAGTTTGTGATAAGAAATTTCCTCATAAATATCGTTTAATTCAACATCAACTCATTCATACCGGAGAAAAACCATTTTCATGTGAGATTTGTTTAAAAAAATTTATTCAAAAATGTGATTTAATTGCACATAAAGAAACACATACTGGAGAAAAACCTTTTGCATGTAAAGTTTGTGATAAAAAATTTACTCGCAAAAATAATTTAACTCTTCACAAAATCATTCATACTGGAGAAAGGCCATTTTCATGTGAAGTTTGTGATAAGAAATTTACTCAGAAACGTTATTTAATTCGACATAAACTTAATGTTCATACTGAAGATAAACCTGTCTCATGA
- Protein Sequence
- MEFEKQLNKEFIIKDEIFKETVYEIEHVSIKEEIPEETVKIENVFIKEEILEEPVKIKEEENHLNDSITEYEDIKLEQQLNTELIIKDEILNENLLEHQQTDIEDKHFSCKICGKTFILKEDFFKHEFIHTRGKSLSCEICNKTFSDRSNLIRHKRIHTGQKPFTCEVCEKKFNQKSDLNLHKRMHTGEKPFNCEVCDKKFTRKRGLLIHKLIHTGEKPLTCEFCEKIFFQIQALNRHLKIHTGEKRTICEVSDKEFTCDVCDKKFTQKSSLIQHKLLHSGDKKFSCEFCDKKFSQMQHLNRHRRIHTGEKPYSCEFCDKKFTDHSNLVVHERLHKGEKPFSCEVCDKKFSQKINLTLHKGIHFCEKPLNVKSETVSEQFPCDICKKIFYQQQNLSKHKRIHIGENPFTCEVCDKKFPHKYRLIQHQLIHTGEKPFSCEICLKKFIQKCDLIAHKETHTGEKPFACKVCDKKFTRKNNLTLHKIIHTGERPFSCEVCDKKFTQKRYLIRHKLNVHTEDKPVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -