Ccar002588.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:21480913-21482694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.2e-05 0.00091 19.9 2.6 1 23 135 158 135 158 0.95 2 16 0.0028 0.06 14.2 0.4 1 22 168 189 168 189 0.95 3 16 0.0061 0.13 13.1 2.5 1 23 196 219 196 219 0.96 4 16 8e-06 0.00017 22.2 0.7 1 23 226 248 226 248 0.97 5 16 2.5e-05 0.00053 20.7 1.4 1 23 254 276 254 276 0.98 6 16 2.7e-05 0.00058 20.5 2.7 1 23 282 304 282 304 0.98 7 16 6.7e-05 0.0014 19.3 4.2 2 23 311 332 310 332 0.95 8 16 2.7e-05 0.00059 20.5 1.5 1 23 338 360 338 360 0.98 9 16 8.7e-05 0.0019 18.9 0.7 1 23 366 388 366 388 0.98 10 16 1.7e-05 0.00036 21.2 1.5 1 23 393 415 393 415 0.98 11 16 5.6e-05 0.0012 19.5 0.9 1 23 421 443 421 443 0.98 12 16 0.0001 0.0022 18.7 3.9 1 23 449 471 449 471 0.97 13 16 4.2e-05 0.0009 19.9 1.3 1 23 477 499 477 499 0.98 14 16 1.2e-05 0.00025 21.7 4.4 1 23 505 527 505 527 0.98 15 16 0.0005 0.011 16.6 2.3 1 23 533 555 533 555 0.97 16 16 0.00031 0.0066 17.2 0.6 1 20 561 580 561 582 0.95
Sequence Information
- Coding Sequence
- ATGGACATACAAAAATTACATTCAGGGTTATTAATTAAAGATGAAGGCAATGAGTCAGATACTGAGGACAATGAAATTTATTCAAATATTGATGAAATCGAAAATTATTCAAATGGTGATGAAATGATGGATATTGATGATCAATATATAAATAAAAATGAGAAAACAGTAAACCTAAAAAAACATATCAATGACATTAAAATTGAAAAACTACATTCCGAATTAATTATCAAAGATGAAGACAATGATGAATTAATGGAAGAAACTAGTGATGAAATTGGAGAACAAGATGCGTGTTCAAGCGACGATGACAAAAATTATTCAGATAACGATGAAATTTCAGAAGAATCATCAGATAATGATGAATTTTATGGCGGAAAACAATACACTGGACAAAAACCTTACGCATGTGATATTTGTGATAAAAAATTTCGATTTAAAAGCTTTTTAAAAAGACATAAATTAATCAAGCATGAATTAATTGATATCGTTAAAAAATATTTTTCATGTGATATTTGTGACAATAAATTTACTACAGAATTCGATTTAGGTAGACATCTGAAACGTTACACTGACGAAGAAAGATATCCGTGTAATATTTGTAATAAAACATTTCACAAAGACGAAGATTTATTTTTACATGGCAAACGATTTCATTCAATTGAATTAGAATTATATGTATGTGATGTTTGTGATAAAAAATTTCCTAAAAAGAGCAGTTTAAGTCGGCATAAAGAAATTCATACTGAAGAAAAACGATTTTCCTGTGATGTTTGTGATAGAAAGTTTACTTATGTTTCTAATTTATCTCAACATAAACGAATACACACCGGAGAGAAACCATATTCATGTGATGTCTGTGATAAGAAATTTAGTGGTCGAAATAAACTGAAAAGACATAAGCAAACTCATAGCGAAGAGAGACCGTGTTCATGTGATGTTTGTGGTAAGAAATTTCGGAACAACAGCGGTTTAAACCATCATAAATTAATCCATACTGATGTGAAACCATTTTCTTGTGATAATTGCGATAAAAAATATATTACATCTAGCGCTTTAAAAACTCATAAACTAACTCATTCGGGAAAGAAACCATTTTCGTGTGATGAATGTAATAAAAAATTTCTTACAGCGGATTATTTAAACAAACATATACAAATTCATCGTGAAAAACGTTATTCATGTGATATTTGTAGTCAAAAATTTACCGAAAAAGGTACTTTAAAGAGGCATCAATTAACTCATACTAAAGAAAAACGATATTCATGTGATATTTGTAATAAGAAATTTGCTCTTAAATGGACTTTAAATACTCATATATATACACATATCGGTGAAAAATTACATTCATGTGATATTTGTAATAAAAAGTTTTCCCAAAAAACCGGTTTAATATCACATAAAAAAAGACATAGTGGTAAAAAACCATTTTCATGTGAAACATGTAAGAATAGATTTGTTGATAGAAGTAGTTTAGTTCGACATCAACGGATTCATACTGGAGAAAAACCATTTTCATGTGAAATTTGTGATAAAAAATTTACTTACAAACATAATTTGACTGAACATAAACGACTCCATAGTAAGAAACAACAATTTTCATGTAGTGCTTGTGATAAAACATTTATCAAGAAAATCAATTTCATCAAACATAAACGAAATCATTATGGAAAATCACCATTTTCATGTGATGATTGTGATAAAATATTCACGGATGAAAATCTTTTAAAGAATCATAAACATGCAAATATAATTGTTGTAATGAAACATTTCGTCTTATAG
- Protein Sequence
- MDIQKLHSGLLIKDEGNESDTEDNEIYSNIDEIENYSNGDEMMDIDDQYINKNEKTVNLKKHINDIKIEKLHSELIIKDEDNDELMEETSDEIGEQDACSSDDDKNYSDNDEISEESSDNDEFYGGKQYTGQKPYACDICDKKFRFKSFLKRHKLIKHELIDIVKKYFSCDICDNKFTTEFDLGRHLKRYTDEERYPCNICNKTFHKDEDLFLHGKRFHSIELELYVCDVCDKKFPKKSSLSRHKEIHTEEKRFSCDVCDRKFTYVSNLSQHKRIHTGEKPYSCDVCDKKFSGRNKLKRHKQTHSEERPCSCDVCGKKFRNNSGLNHHKLIHTDVKPFSCDNCDKKYITSSALKTHKLTHSGKKPFSCDECNKKFLTADYLNKHIQIHREKRYSCDICSQKFTEKGTLKRHQLTHTKEKRYSCDICNKKFALKWTLNTHIYTHIGEKLHSCDICNKKFSQKTGLISHKKRHSGKKPFSCETCKNRFVDRSSLVRHQRIHTGEKPFSCEICDKKFTYKHNLTEHKRLHSKKQQFSCSACDKTFIKKINFIKHKRNHYGKSPFSCDDCDKIFTDENLLKNHKHANIIVVMKHFVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -