Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:3039327-3041065[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00011 0.0023 18.7 1.2 1 23 71 93 71 93 0.96

2 16 2.6e-06 5.6e-05 23.8 3.0 1 23 99 122 99 122 0.96

3 16 0.017 0.37 11.7 3.7 1 21 142 162 142 164 0.94

4 16 4.9 1.1e+02 4.0 0.2 1 12 169 180 169 185 0.89

5 16 1.9e-06 4.2e-05 24.1 2.4 1 23 238 260 238 260 0.98

6 16 0.00016 0.0034 18.1 1.2 2 23 268 289 268 289 0.97

7 16 0.00041 0.0089 16.8 2.4 1 23 295 317 295 317 0.98

8 16 0.0008 0.017 15.9 4.9 1 23 324 346 324 346 0.98

9 16 7.3e-06 0.00016 22.3 0.8 1 23 352 374 352 374 0.98

10 16 0.00064 0.014 16.2 4.6 1 23 380 402 380 402 0.97

11 16 1.4e-07 3e-06 27.7 0.1 1 23 408 430 408 430 0.97

12 16 5.6e-06 0.00012 22.7 0.2 1 23 436 459 436 459 0.95

13 16 0.076 1.6 9.7 1.2 1 23 465 487 465 487 0.96

14 16 3.5e-06 7.6e-05 23.3 0.5 1 23 493 515 493 515 0.98

15 16 3.5e-05 0.00076 20.2 3.7 1 23 521 543 521 543 0.99

16 16 3e-06 6.4e-05 23.6 0.9 1 23 549 571 549 571 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00011	0.0023	18.7	1.2	1	23	71	93	71	93	0.96
2	16	2.6e-06	5.6e-05	23.8	3.0	1	23	99	122	99	122	0.96
3	16	0.017	0.37	11.7	3.7	1	21	142	162	142	164	0.94
4	16	4.9	1.1e+02	4.0	0.2	1	12	169	180	169	185	0.89
5	16	1.9e-06	4.2e-05	24.1	2.4	1	23	238	260	238	260	0.98
6	16	0.00016	0.0034	18.1	1.2	2	23	268	289	268	289	0.97
7	16	0.00041	0.0089	16.8	2.4	1	23	295	317	295	317	0.98
8	16	0.0008	0.017	15.9	4.9	1	23	324	346	324	346	0.98
9	16	7.3e-06	0.00016	22.3	0.8	1	23	352	374	352	374	0.98
10	16	0.00064	0.014	16.2	4.6	1	23	380	402	380	402	0.97
11	16	1.4e-07	3e-06	27.7	0.1	1	23	408	430	408	430	0.97
12	16	5.6e-06	0.00012	22.7	0.2	1	23	436	459	436	459	0.95
13	16	0.076	1.6	9.7	1.2	1	23	465	487	465	487	0.96
14	16	3.5e-06	7.6e-05	23.3	0.5	1	23	493	515	493	515	0.98
15	16	3.5e-05	0.00076	20.2	3.7	1	23	521	543	521	543	0.99
16	16	3e-06	6.4e-05	23.6	0.9	1	23	549	571	549	571	0.98

Sequence Information

Coding Sequence: ATGTCAAAAGATTTAAGTTTTGATGAAAAAACTCTTGACATAAGTGATGAACTGATTAAAATGGAAAAAGAATTACATCCAGAAACAGGATTCGTGGTTAAGGAAGAAGAATGGGAAGAAAATGTTTCAATAGAACCTCAACAAAATCAGAATGAAAATGAAATTAACAAGACAGTTAACAATAAACAAACTCTGAACCAAGAAAAACGTTTCACTTGTGATGTTTGCGATAAAAAATTTGCCCGAATGAGTCATTTACTCGAACACAATCTTATTCATTCCAAAGAAAAGAATTACTCATGTGATCGTTGTGGTAAAAAATTCACTCGACAAAGCAGCTTAAATCGACATAATCGACAACAACATGCCGAGGAAAAATCATTTTCATCAAATATTAAAGATGAAGGTTGGTCAAATCAATATTTTTCATGCGATATTTGTGAAAAAATGTTTGAATCCGAATTTAATTTCGAAACACATAAACGGTGTCACACCGATGAGACGTTTTCTTGTGATGCTTGTGAAAAAGCTTTTACCCATTTATTGGAACATCAAATATTGAAAATTGAAGATAAACCGTTTTATATTAAAATAGAAAAACAATCCCACTTAGAAATCATATTGAAAGAAGAAATATTCGAGGAAAAACATGATAATGATTTGGAACTAGAAGAAATTCGTATGGAGGAAAAAACAGTAGAAGAAAAGTGTTTTTCGTGTAATTCTTGTGATAAAACGTTTTCCAGAGAAAGTTATTTAACTCAACATCAACTTACACATTCGAAAATAACGTCTGCGAATTCATGTAATTTTTGTGGGAAAAAATATCCAACAAAAGCTCTTCTAGCTCAACATAAACGAAAACACACGGGAGAAAAACCATTTTCATGTGAGATTTGTGGTAAATTATTTCATGCGCGAACAAATCTACGTAAACATCGTCAAATTCACACGGAAAAAGAAAAATCATTTTCATGTGATGTTTGTAATAAAACTTTCACATTGAAACGTTATTTACACGAACATAAACGATCGCATTCGAGCGAAAAAAACTTCTCTTGCGATATTTGTGGTCAAACGTATGGCCGGAAAAGTTACTTGGATCGACATCTACAAACTCACACCGGAATCAAGCCGTTTGCCTGTGATATCTGTGATAAACGATTTTATCGTTCATGCCGATTAAAAAAACATAAACGAGCTCATACTGGTGAAAAACCGTATGTCTGTGATGTTTGTGGTAAAACATTTAGCCGGCCGGATAATTTAGTTCGACATAAAGCGATTCATACCGGTGAAAAACAGTTTGCGTGTGATGTTTGTAATAAAACATTTGCGGATCCAAGTAATTTAATTCAACATAATAAACGTGTACATTTACGCGAAAAACCGTTTGCATGCGATATTTGTGGGAAACAATTTTTGGTAAAATGTCGTTTAGCTATGCATCGACGAATACATACCGGTGAAAAACCATATCCGTGTGATGTTTGTTTTAAAACATTTAGTCGACCGGATAGTTTAGTTTTGCATAAGCGTACGCATACGGGGGAAAAACCGTATACGTGTGATGTTTGTGATAAAAAATTTACGCAATGTATTGAATTGAGTAATCATAAACGAACGCATACGGGGGAGAGGCCGTTTTCGTGTGATGTTTGTAATAAGACTTTTGCATTTCCAAGTAATTTAAGTCAACATAAACGAATTCATATCCGAGAGAAATCTTATTAA
Protein Sequence: MSKDLSFDEKTLDISDELIKMEKELHPETGFVVKEEEWEENVSIEPQQNQNENEINKTVNNKQTLNQEKRFTCDVCDKKFARMSHLLEHNLIHSKEKNYSCDRCGKKFTRQSSLNRHNRQQHAEEKSFSSNIKDEGWSNQYFSCDICEKMFESEFNFETHKRCHTDETFSCDACEKAFTHLLEHQILKIEDKPFYIKIEKQSHLEIILKEEIFEEKHDNDLELEEIRMEEKTVEEKCFSCNSCDKTFSRESYLTQHQLTHSKITSANSCNFCGKKYPTKALLAQHKRKHTGEKPFSCEICGKLFHARTNLRKHRQIHTEKEKSFSCDVCNKTFTLKRYLHEHKRSHSSEKNFSCDICGQTYGRKSYLDRHLQTHTGIKPFACDICDKRFYRSCRLKKHKRAHTGEKPYVCDVCGKTFSRPDNLVRHKAIHTGEKQFACDVCNKTFADPSNLIQHNKRVHLREKPFACDICGKQFLVKCRLAMHRRIHTGEKPYPCDVCFKTFSRPDSLVLHKRTHTGEKPYTCDVCDKKFTQCIELSNHKRTHTGERPFSCDVCNKTFAFPSNLSQHKRIHIREKSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -