Ccar005454.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:54573891-54577023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.001 0.022 15.6 1.6 2 23 113 134 112 134 0.96 2 19 3e-05 0.00064 20.4 1.1 1 20 140 159 140 162 0.91 3 19 4.5e-06 9.7e-05 23.0 1.3 1 23 168 190 168 190 0.97 4 19 2.8e-05 0.00061 20.5 2.9 1 23 196 218 196 218 0.96 5 19 0.00019 0.0041 17.9 2.3 1 23 224 246 224 246 0.95 6 19 0.0004 0.0087 16.8 6.2 1 23 252 274 252 274 0.98 7 19 0.00041 0.0088 16.8 3.6 1 23 280 302 280 302 0.96 8 19 0.00044 0.0095 16.7 1.1 3 23 310 330 309 330 0.98 9 19 3.9e-05 0.00084 20.0 1.2 1 23 336 358 336 358 0.98 10 19 7.7e-05 0.0017 19.1 3.8 1 23 364 386 364 386 0.96 11 19 0.002 0.043 14.7 2.3 1 23 392 414 392 414 0.96 12 19 0.041 0.88 10.5 9.9 1 23 420 443 420 443 0.95 13 19 0.0018 0.039 14.8 1.9 1 23 688 710 688 710 0.95 14 19 5.7e-05 0.0012 19.5 2.5 1 23 716 738 716 738 0.96 15 19 0.0038 0.083 13.8 5.6 1 23 744 766 744 766 0.96 16 19 0.57 12 6.9 4.3 1 23 772 794 772 794 0.96 17 19 4.6e-05 0.001 19.8 4.0 1 23 800 822 800 822 0.96 18 19 1.7e-05 0.00037 21.2 2.1 1 23 832 854 832 854 0.95 19 19 9.6e-07 2.1e-05 25.1 1.9 1 23 860 882 860 882 0.97
Sequence Information
- Coding Sequence
- ATGGCAAGTAATTCATTTCAAGATGTCGAAATTAAAGATGAAATATTAGAAGATAATCATACAATGCAAGAAGGGCGAATTAAAAATGAAATAGAAGAATTCAGCAACAGTGTTAAATTGGAAGAAACGCTAGAAAACAGTAGTGATTTTAAGCATGAACAAAATAATGAAAATGATTTAATTAAAAATGAAAATGTTAAACTTGAAAGGCAATTGAATACAGAAGTCATTATTAAAAATGAATTAATAAATGTTGACACTGAAGATCCACAACCATTTTTGAGAGATGATCATCTAGTTGAATACAAACGTACTCACATTGAAGAAACACTATTGCCTTGTGATGTTTGTGACAAAAAATTTTCCAAACATTGGACTTTAGTTCAACATAAACGACTTCACTCTGGAGAAAAGCCATATTTTTGTGATATTTGTAATAAAACATTTAATAATAAAAGTAATTTAATTGAGCATACATGGACTCATACTGAAGAAAATGCATTTCCATGTGATAAGTGTGATAAAACATTTAATAGACAAAACAGTTTGATTAAACACAAAATGATACATTCTGGAGATAAATCATTTTTATGTGATATGTGTAATAAAAAGTTTGTTAATAGAACTGATTTAACTAAACATAAACGAACTCATACGGGAGAGAAATCATTTTTATGTGATATATGTAATGCAACATTTAATAGAAAAAGCAGTTTAATACATCATAAAATGTCCCACACTGGTGAAAAACCGTTTTCATGTGATGTGTGTCAAAAAACATTTAAAACACAACACTGTTTGATTAAACATAAAATGATACATTCTGGGGATAAACCATTTTTATGTGATATGTGTAGTAAAAAATTTGTGAATAGAACTCATTTAATTGAACATAAACGAACTCATACGGGAGAGAAACCATTATTATGTGATATGTGTAATGCAACATTTAATAGAAAAAGCAGTTTAATTCAACATAAAATGTCACACACTGGTGAAAAACCATTTTCATGTGATGTATGTAAAAAAACATTTAATAGAAATTGGAGTTTGCTTGAACATAAACGGATACATTCTGGAGAAAAACCATATTTATGTGATATTTGTAGTAAAGGTTTTACAAGCCGAACTCATTTAAATACACATAAACGGACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAGCAGGTCATTTAATCATGGAAGTACTTTAGTTAAACATAAACGATTACACACGGGAGAAAGACCATTTTTATGTGATATGTGTCATAAAACATTTACATGTCAAAGTCATTTAAATAAACATAAACGTTCGACACATAATGGAGAAAAAACATTTTCTAAATCTTTTGAACACGAGAAAATGGAACATTCATTGGCAGTTATTAGCGAAAATAATCAATTTGAAAAACGATTAAATACAGAATTCTCTATTAAAAACGAAGAAGACTATTTAAACCCTGAAAAATCACTTCACACCAAAGAAAAACTATTTCCACGAAATAAATCTGATGAACGGGAGAAAAATGAGCATTCATTGGCAGTTATTAGCGAAAATAATAAATTTGAAAAACGATTAAATACAGAATTCTCTATTAAAAACGAAGAAGACTATTTAAACCCTGAAAAATCACTTCACACCAGAGAAAAACTATTTTCACGAAATGAGTCTGATGAACGGGAGAAAAATGAACATCCATTGTCAGTTTTTCACGATAAACTTGATAAAGAATTAAATACAGAATTTACTATTAAAAAAGAAGACAGAGTTACTACACAAGATGCACAGATTAAAAATTCAATATTGGAAGAAAGTAACACTGATAGCATGGTAGAAATGCCAGATAACAAAAGTGATATTAGTTGGGAACCTGAACGAAATCATGAAAATGGAAAAACAATAAATACCGAAATATTGTCGATTAAAGAAGAAATGTTAGAACCAAATATTTTTGAACCACAAATTCAAATTGAAGATCAACCACTTTTATTTCCTAAATTTAAAAGAAAAGGTTTAATTAAACCTAAACAGATTTGCAAGGGAGCAAAATCATTTTTATGTGATATTTGTAGTAAAGTTTTAACGAGCCAAAATCATTTAAATGAGCATAAACGTCTTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAGCAAGTCATTTACCCATGCGAGTACTTTAGTTAAACATAAACAATCACACACAGGAGAAAGACCATTTTTATGTGATATATGTAATAAAACATTTATATGTCAAAGTCATTTAAATGAACATAAACGAACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTTGCCAATCATTTGCTCATGGGAGTAGTTTATTTAAACATAAACTGACTCACAGTGGAGAAAAACCATTTTTATGTGATATTTGTAGTAAAAAATTTAGTAGGAAACATGATTTAGCCCAACACAAACGGACTCATACCGGAGAAAAATTACATGATAAAAAATTTTTATGTGATATTTGTAATAGAACATTTAATAAGAAAAGTAATTTAAATAAACACAAATTGATTCACAGTGGAGAAAAGCCATTTTCATGCGACATTTGTAGTAAATCATTTTCAGATAAAAGTAATTTAAGTAAACATAAACGGGGTCACATTAAGACTGAAGTAACACGAGCTCAGTCGATTTTAACACACGTTTTTTCAACTGCACGTTTGTTAGAATGA
- Protein Sequence
- MASNSFQDVEIKDEILEDNHTMQEGRIKNEIEEFSNSVKLEETLENSSDFKHEQNNENDLIKNENVKLERQLNTEVIIKNELINVDTEDPQPFLRDDHLVEYKRTHIEETLLPCDVCDKKFSKHWTLVQHKRLHSGEKPYFCDICNKTFNNKSNLIEHTWTHTEENAFPCDKCDKTFNRQNSLIKHKMIHSGDKSFLCDMCNKKFVNRTDLTKHKRTHTGEKSFLCDICNATFNRKSSLIHHKMSHTGEKPFSCDVCQKTFKTQHCLIKHKMIHSGDKPFLCDMCSKKFVNRTHLIEHKRTHTGEKPLLCDMCNATFNRKSSLIQHKMSHTGEKPFSCDVCKKTFNRNWSLLEHKRIHSGEKPYLCDICSKGFTSRTHLNTHKRTHTGEKPYLCDICSRSFNHGSTLVKHKRLHTGERPFLCDMCHKTFTCQSHLNKHKRSTHNGEKTFSKSFEHEKMEHSLAVISENNQFEKRLNTEFSIKNEEDYLNPEKSLHTKEKLFPRNKSDEREKNEHSLAVISENNKFEKRLNTEFSIKNEEDYLNPEKSLHTREKLFSRNESDEREKNEHPLSVFHDKLDKELNTEFTIKKEDRVTTQDAQIKNSILEESNTDSMVEMPDNKSDISWEPERNHENGKTINTEILSIKEEMLEPNIFEPQIQIEDQPLLFPKFKRKGLIKPKQICKGAKSFLCDICSKVLTSQNHLNEHKRLHTGEKPYLCDICSKSFTHASTLVKHKQSHTGERPFLCDICNKTFICQSHLNEHKRTHTGEKPYLCDICCQSFAHGSSLFKHKLTHSGEKPFLCDICSKKFSRKHDLAQHKRTHTGEKLHDKKFLCDICNRTFNKKSNLNKHKLIHSGEKPFSCDICSKSFSDKSNLSKHKRGHIKTEVTRAQSILTHVFSTARLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -