Ccar022516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997754.1:119966587-119969237[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.1e-05 0.00024 21.7 2.4 1 23 76 98 76 98 0.98
2 15 1e-05 0.00022 21.9 2.1 1 23 104 126 104 126 0.99
3 15 1.1e-05 0.00025 21.7 1.0 1 23 132 154 132 154 0.98
4 15 0.00036 0.0077 17.0 1.2 1 23 160 182 160 182 0.96
5 15 0.00016 0.0034 18.1 1.1 1 20 188 207 188 210 0.92
6 15 4.7e-05 0.001 19.8 1.2 1 23 423 445 423 445 0.98
7 15 2e-05 0.00044 20.9 2.5 1 23 451 473 451 473 0.99
8 15 7.7e-06 0.00017 22.3 1.5 1 23 479 501 479 501 0.98
9 15 0.0001 0.0022 18.7 1.7 1 23 507 529 507 529 0.98
10 15 0.00016 0.0034 18.1 1.1 1 20 535 554 535 557 0.92
11 15 0.00014 0.0029 18.3 2.6 2 23 720 741 720 741 0.97
12 15 2e-05 0.00044 20.9 2.5 1 23 747 769 747 769 0.99
13 15 7.7e-06 0.00017 22.3 1.5 1 23 775 797 775 797 0.98
14 15 0.0001 0.0022 18.7 1.7 1 23 803 825 803 825 0.98
15 15 2.5e-06 5.5e-05 23.8 0.6 1 23 831 853 831 853 0.98

Sequence Information

Coding Sequence
ATGAATGAACTGACAATTAAACATGAAGATAATAATGAAGTGCTGGAGGAATTTGATTCAAATAATGATGTTAGTGAAATGTGTAACAATGTTGAGACTAATAAAATCAAAATTGAAAAAGAATTGCATTCAGAACTTATAATAAAAGATGAGGATTATGATGGAATGTCCGAAGAAACTGAAAGTTTTAAAAAAATGGATGACTGCCATACAGTCGATAAACCTTATACATGTGACTTTTGTAATAAAAAATTTTCTACTAGACAAACTTTAAATATTCATATACGACTTCATACTGGAGACAGACCTTATACTTGCGATATCTGTGATATGAAATTCACAGTAAGTTCCCATTTAGTTAAACATAAACGTGTTCATACTGGAGAAAAGCCTTATTCCTGCGATATTTGCGATAAAAAATTTAAATATATAGACGGTTTAAATCGTCACAAACGAGTGCATACTGGAGAAAAACCTTATTCCTGCGATGTTTGCGATAAAAAATTTGCACGAAAGCAATATTTAGATCAACATAAACTACTGCATACTGGAGAAAAACCTTATTCCTGCGATATTTGTGATAAAAAATTTGCCCAAAGGTCCTATTTACTTAACCACAAATGGACACATATTGGAGTAAACCGTGTGTATGTGAGTGAAATTTGTAACAATGTTGAGACTAATAAAATCAAAATTGAAAAAGAATTGCATTCAGAACTTATCACAAAAGATGAGGTTTGTGATGAAATGTCCGAAGAAACTGAAAGTTTTAAGAAAATGGATGATTGCCATACACTCGATAAATCTGAGGATTGTGATGGAATGTCCGAAGAAACTGGAAGTTTTAAGAAAATGGATGACTGCCATACAGTCGATAAATCTGAGGATTGTGATGGAATGTCCGAAGAAACTGGAAGTTTTAAGAAAATGGATGACTGCCATACAGTCGATAAATCTGAGGATTGTGATGGAATGCATTCAGAACTTATAATAAAAGCTGAGAAGTGTGATGGAACGTTCGAAGAAACTGAAAGTTTTAAGAAAATGGATGACTGCCATACAGTCGATAAATCTGAGGATTGTGATGAAATGCATTCAGAACTTATAATAAAAGATGAGGAGTGTGATGGAATGTTCGAGGAAGCTGAAAGTTTTAAGAAAATGATTGACTGCCATACAGTCGATAAATCTGAGGATTATGATGGAATGTCCGAAGAAACTGAAAGTTTTAAGAAAATGGATGACTGCCTTACGGTCGATAAACCTTATACATGTGATTTTTGTAATAAAAATTTTTCTACCAGACCAGGTTTAAATTATCATATACGACTTCATACTGGAGACAGACCTTATACTTGCGATATTTGTAATATGAAATTCACAGTAAGTTCCCATTTAGTTAAACATAAACGTGTTCATACTGGAGAAAAGCCTTATTCCTGCGATATTTGCGATAAAAAATTTAAATATACAGACGGTTTAAATCGTCACAAACGAGTGCATACTGGAGAAAAACCTTATTCCTGTGATGTTTGCGATAAAAAATTTGCACGAAAGCAATATTTAGATCAACATAAACGACTGCATACTGGAGAAAAACCTTATTCCTGCGATATTTGTGATAAAAAATTTGCCCAAAGGTCCTATTTACTTAACCACAAATGGACACATATTGGAGTAAACCGTGTGTATGTGAGTGAAATTTGTAACAATGTTGAGACTAATAAAATCAAAATTGAAAAAGAATTGCATTCAGAACTTATCACAAAAGATGAGGTTTGTGATGAAATGTCCGAAGAAACTGGAAGTTTTAAGAAAATGGATGACTGCCATACAGTCGATAAATCTGAGGATTGTGATGGAATGTCCGAAGAAACTGGAAGTTTTAAGAAAATGGATGACTGCCATACAGTCGATAAATCTGAGGATTGTGATGGAATGCATTCAGAACTTATAATAAAAGCTGAGAAGTGTGATGGAACGTTCGAAGAAACTGAAAGTTTTAAGAAAATGGAAGACTGCCATACAGTCGATAAATCTGAGGATTGTGATGAAATGCATTCAGAACTTATAATAAAAGATGAGGATTATGATGGAATGTCCGAAGAAACTGAAAGTTTTAAAAAAATGGTTGACTGCCATACAGTCGATAAACCTACATGTGATTTTTGTAATAAAAAATTTTCTACCAGACAAAGTTTAAATTATCATATACGACTTCATACTGGAGAAAGACCTTATACTTGCGATATTTGTAATATGAAATTCACAGTAAGTTCCCATTTAGTTAAACATAAACGTGTTCATACTGGAGAAAAGCCTTATTCCTGCGATATTTGCGATAAAAAATTTAAATATACAGACGGTTTAAATCGTCACAAACGAGTGCATACTGGAGAAAAACCTTATTCCTGTGATGTTTGCGATAAAAAATTTGCACGAAAGCAATATTTAGATCAACATAAACGACTGCATACTGGAGAAAAACCTTATTCCTGCGATATTTGTGATAAAAAATTTGCCCAAAGGTCCAATTTAGTTGATCATAAATTGACACATATTGGAGTAAACCGTATGTAA
Protein Sequence
MNELTIKHEDNNEVLEEFDSNNDVSEMCNNVETNKIKIEKELHSELIIKDEDYDGMSEETESFKKMDDCHTVDKPYTCDFCNKKFSTRQTLNIHIRLHTGDRPYTCDICDMKFTVSSHLVKHKRVHTGEKPYSCDICDKKFKYIDGLNRHKRVHTGEKPYSCDVCDKKFARKQYLDQHKLLHTGEKPYSCDICDKKFAQRSYLLNHKWTHIGVNRVYVSEICNNVETNKIKIEKELHSELITKDEVCDEMSEETESFKKMDDCHTLDKSEDCDGMSEETGSFKKMDDCHTVDKSEDCDGMSEETGSFKKMDDCHTVDKSEDCDGMHSELIIKAEKCDGTFEETESFKKMDDCHTVDKSEDCDEMHSELIIKDEECDGMFEEAESFKKMIDCHTVDKSEDYDGMSEETESFKKMDDCLTVDKPYTCDFCNKNFSTRPGLNYHIRLHTGDRPYTCDICNMKFTVSSHLVKHKRVHTGEKPYSCDICDKKFKYTDGLNRHKRVHTGEKPYSCDVCDKKFARKQYLDQHKRLHTGEKPYSCDICDKKFAQRSYLLNHKWTHIGVNRVYVSEICNNVETNKIKIEKELHSELITKDEVCDEMSEETGSFKKMDDCHTVDKSEDCDGMSEETGSFKKMDDCHTVDKSEDCDGMHSELIIKAEKCDGTFEETESFKKMEDCHTVDKSEDCDEMHSELIIKDEDYDGMSEETESFKKMVDCHTVDKPTCDFCNKKFSTRQSLNYHIRLHTGERPYTCDICNMKFTVSSHLVKHKRVHTGEKPYSCDICDKKFKYTDGLNRHKRVHTGEKPYSCDVCDKKFARKQYLDQHKRLHTGEKPYSCDICDKKFAQRSNLVDHKLTHIGVNRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-