Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:103512043-103515675[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.00062 0.013 16.3 2.4 2 23 373 394 372 394 0.95

2 23 0.057 1.2 10.1 0.3 1 23 399 421 399 421 0.94

3 23 0.091 2 9.4 0.5 1 23 427 450 427 450 0.94

4 23 0.07 1.5 9.8 5.1 1 23 454 477 454 477 0.93

5 23 0.00014 0.003 18.3 1.6 1 23 483 506 483 506 0.97

6 23 0.0034 0.074 13.9 0.5 1 23 513 536 513 536 0.96

7 23 0.004 0.087 13.7 0.9 1 23 543 565 543 565 0.97

8 23 0.00056 0.012 16.4 0.1 1 23 571 593 571 593 0.97

9 23 0.0025 0.054 14.3 0.6 1 23 598 620 598 620 0.98

10 23 0.00015 0.0033 18.2 0.2 1 23 625 647 625 647 0.97

11 23 0.0092 0.2 12.6 0.3 3 23 655 675 654 675 0.92

12 23 0.0028 0.061 14.2 0.8 1 23 681 703 681 703 0.97

13 23 0.0025 0.054 14.3 0.6 1 23 708 730 708 730 0.98

14 23 0.00011 0.0024 18.6 0.2 1 23 735 757 735 757 0.98

15 23 0.00022 0.0047 17.7 0.6 1 23 763 785 763 785 0.97

16 23 0.013 0.27 12.1 0.2 1 23 796 818 796 818 0.97

17 23 5e-05 0.0011 19.7 4.7 1 23 824 846 824 846 0.98

18 23 0.037 0.79 10.7 1.9 1 23 852 874 852 874 0.97

19 23 0.00013 0.0028 18.4 0.6 1 23 880 902 880 902 0.98

20 23 0.0027 0.058 14.3 1.7 1 23 908 930 908 930 0.95

21 23 0.0063 0.14 13.1 3.3 2 23 937 959 936 959 0.94

22 23 0.017 0.36 11.8 0.5 1 23 964 987 964 987 0.94

23 23 0.0016 0.034 15.0 0.5 2 23 994 1016 993 1016 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.00062	0.013	16.3	2.4	2	23	373	394	372	394	0.95
2	23	0.057	1.2	10.1	0.3	1	23	399	421	399	421	0.94
3	23	0.091	2	9.4	0.5	1	23	427	450	427	450	0.94
4	23	0.07	1.5	9.8	5.1	1	23	454	477	454	477	0.93
5	23	0.00014	0.003	18.3	1.6	1	23	483	506	483	506	0.97
6	23	0.0034	0.074	13.9	0.5	1	23	513	536	513	536	0.96
7	23	0.004	0.087	13.7	0.9	1	23	543	565	543	565	0.97
8	23	0.00056	0.012	16.4	0.1	1	23	571	593	571	593	0.97
9	23	0.0025	0.054	14.3	0.6	1	23	598	620	598	620	0.98
10	23	0.00015	0.0033	18.2	0.2	1	23	625	647	625	647	0.97
11	23	0.0092	0.2	12.6	0.3	3	23	655	675	654	675	0.92
12	23	0.0028	0.061	14.2	0.8	1	23	681	703	681	703	0.97
13	23	0.0025	0.054	14.3	0.6	1	23	708	730	708	730	0.98
14	23	0.00011	0.0024	18.6	0.2	1	23	735	757	735	757	0.98
15	23	0.00022	0.0047	17.7	0.6	1	23	763	785	763	785	0.97
16	23	0.013	0.27	12.1	0.2	1	23	796	818	796	818	0.97
17	23	5e-05	0.0011	19.7	4.7	1	23	824	846	824	846	0.98
18	23	0.037	0.79	10.7	1.9	1	23	852	874	852	874	0.97
19	23	0.00013	0.0028	18.4	0.6	1	23	880	902	880	902	0.98
20	23	0.0027	0.058	14.3	1.7	1	23	908	930	908	930	0.95
21	23	0.0063	0.14	13.1	3.3	2	23	937	959	936	959	0.94
22	23	0.017	0.36	11.8	0.5	1	23	964	987	964	987	0.94
23	23	0.0016	0.034	15.0	0.5	2	23	994	1016	993	1016	0.94

Sequence Information

Coding Sequence: ATGTCAATTGAAGAATATGATCCATTACTAATTAAAAATGAAATATTAGAAGAACCACAACCAATGGCAGTTCAAACAATTCAAGAAAATGATTCATTTTTAACAAAAAATAAAGAGCAAAGACTATCAGGAATTACAGATACATTGGTGGAAAGAGTAAATTTTCCAATTGAAGAGTTCGATCCATTGTTAGTAAAAAATGAAAATGTTGAAACTGAACAATTACCACAAACAGAATCAGGAAATATAATTGAAATTTTAGAAGAAATGACACCAAAAGATGCTCAAACAATTCGAGTAAATAGTCCGGTAATAAACAATAAAGAGCAAAGACTATCAGGAATTACAGATACATTGGTGACACCAAAAGATCTTCAAACAATTCGAGTAAACAGCCCGGTAATAAACAATAAAGAGCAAAGACCATCAGAAATTACAGATACATTGGTGGAAAGAGTAAATTTTTCAATTGAAGAGTTCGACCCATTGTTACTAAAAACTGAAAATGTTGAAACTAGTGAACAATTACCACAAACAGAATCAGGAAATATAATTGAAATTTTAGAAGAAATGACACCAAAAGATCTTCAAACAATTCGAGTAAATAGCCCGGTAATAAACAATAAAGAGCAAAGACCATCAGGAATTACAGATACATTGGTGGAAATTAGAGTCAATTTTCCAATTGAAGAGTTCGATCCATTGTTACTAAAAAATGAAAGTAATGAAACAGAACAATTACCACGAACAGAATCGGGAAATATAATTGAAATTTTAGAAGAAATGACACCAAAAGATCTTCAAACAATTCGAGTAAATAGCTCGATAATAAACAATAAAGAGCAAAGACCATCAAGAATTACAGATACATTGGTGACACCAAAAGATCTTCAAAAAATTCGAGTAAACAGCCCGGTAATAAACAATAAAGAGCAAAGACCATCAGGAATTACAGATACATTGGTGACACCAAAAGATCTTCAAACAATTGGAGTAAACAGCCCGTTGCTAAAAAATGAAGACATTGAACAAAAATTACACATAGAATTAATAATAAAAGATGAAGAAATTGATGAAACTGAAACTCAACTTATTCATGAAAAAGAAAAATCGTTATCATGTGAAGTGTGTAATAAAAAGTTTAAACAATCTAGCGAATTATCTTACCATAAAAAATTCCATACAGAAGGAAAATATTCTTGTCAAGTTTGTGATAAAAAATTTGCAATTATTCGAGATTTATATGATCATTTTCTAATTCATAGGAAAACAAATTATTTTGCATGTGATGTTTGTGGTGAAAAATTTATTAAAAAATATGTTATGGATGCACATAAACAAAAATTTCATGAAATTGATTTTAAATGTGAATTTTGTTTTAAAAAATTTAACACCAAAAGTGTATTAGACAAACATAAACAGTTTTATCATATTGAAGAAAAACATTTTGAATGTGATCTTTGTGATACGAAATTTAACTACAAAAATGATTTGATTAAACATAAAAGACGGGTTCACAATTCTAATGAAAAACGTTTTAAATGTAATCTTTGTGATAAGGAATTTATTTTAAGAAATGAATTAGCTGAACATAAAAAACTTGATCATACTGAAGAAGAAAAACTTTTTGCATGCGATCTTTGTGATAAGAAATATAGAAAAAACATATCACTTGTTATGCATAAACGACTGCATAATGGAGAACAACCTTTTGCATGCGATCTCTGTGATGAGAAATTTACAGATAAAAATGCACTTGTTGTTCATAAACAAGTTCACGGTGAACCAATTTTTGAATGCGATATTTGTGAAAACAAATTTAGTAAAAAAATAGAACTTGTTGATCATAAACGAAGTCATGAAGAGAAAATTTTTGCATGTGATCTTTGTGATAAAAAATATGCACAAAATGCTCAACTTATTGTTCACAAACAAACGCATACTGGAGAAAAACCAGTTGCATGCGATCTTTGTGATAAGAAATTTAGTAAAAAAGTAGAACTTGTTGATCATAAAGGACTTCATATTGGAGAACAACCTTTTGCATGCGATCTCTGTGATGAGAAATTTACTCATAAAGTTGCATTTGTTGTTCATAAACAAGTTCACGGTGAACCAATTTTTGAATGCGATATTTGTGAAAACAAATTTAGTAAAAAAATAGAACTTGTTGATCATAAACGAAGTCATGAAGAGAAAATTTTTGTATGTGATCTTTGTGATCAAAAATATGCACAAAATGCTCAACTTATTGTTCATAAACGCACGCATACTGGAGAAAAACCATTTGCATGCGATATTTGTGAAAAAAAATTTAGTAAAAAAATAGAACTTGTTGATCATAAACGAAGTCATAGAGAAAAAAAACCAATTCGTAGAAGATCTTATGTATGTGACGTTTGTGGTAAGATTTTTCTCGAATTTTCTTCATTAAAAATACATAAACTAATCCACACTGGAGAAAGACCCTTTAAATGTAATTTTTGTGTTAAAACATTTAGGCAAAGCAGTACTTTACGGAAACATAAAAAAATTCATATTGGTAAAAAGAAACATGTTTGCGATACTTGTGGTAAAAAATTTTTATTGCGCCAAGAGTTGCTTACTCACAGACGAATTCATACTGGTTATAAACCTTATTCATGCTTTATTTGTGATAAGAAATTTGCACAACTTGGAGGTTTAAAAATTCATCGAAAATTGCATGCTGACGAAAAATATCATTTCTGTAAAGATTGTGATGAAAAATTTATAGATCGTCGAGATTTATATGTTCATAAACTAGTTCATACTGGAGGAACTATGGTTGAATGCGATCTTTGTGATAGAAAATTTTGCCGCAAAGACAGTATTAACAGACATAAAGAAAGAAGGCACAAATTGAAATATCATAACTGTGAAGATTGTAATGAAAAATTTATAGGTCGCCGAGATTTATATGCTCATAAACTAGTTGTTCATACTGGAAGAGTTATGGTTGAATGTGATCTTTGTGATAGAAAATTTACGCGCAAAGCTGGTCTAAAAGGACATAAAGAACGAAGCCACAAATTGAAATAA
Protein Sequence: MSIEEYDPLLIKNEILEEPQPMAVQTIQENDSFLTKNKEQRLSGITDTLVERVNFPIEEFDPLLVKNENVETEQLPQTESGNIIEILEEMTPKDAQTIRVNSPVINNKEQRLSGITDTLVTPKDLQTIRVNSPVINNKEQRPSEITDTLVERVNFSIEEFDPLLLKTENVETSEQLPQTESGNIIEILEEMTPKDLQTIRVNSPVINNKEQRPSGITDTLVEIRVNFPIEEFDPLLLKNESNETEQLPRTESGNIIEILEEMTPKDLQTIRVNSSIINNKEQRPSRITDTLVTPKDLQKIRVNSPVINNKEQRPSGITDTLVTPKDLQTIGVNSPLLKNEDIEQKLHIELIIKDEEIDETETQLIHEKEKSLSCEVCNKKFKQSSELSYHKKFHTEGKYSCQVCDKKFAIIRDLYDHFLIHRKTNYFACDVCGEKFIKKYVMDAHKQKFHEIDFKCEFCFKKFNTKSVLDKHKQFYHIEEKHFECDLCDTKFNYKNDLIKHKRRVHNSNEKRFKCNLCDKEFILRNELAEHKKLDHTEEEKLFACDLCDKKYRKNISLVMHKRLHNGEQPFACDLCDEKFTDKNALVVHKQVHGEPIFECDICENKFSKKIELVDHKRSHEEKIFACDLCDKKYAQNAQLIVHKQTHTGEKPVACDLCDKKFSKKVELVDHKGLHIGEQPFACDLCDEKFTHKVAFVVHKQVHGEPIFECDICENKFSKKIELVDHKRSHEEKIFVCDLCDQKYAQNAQLIVHKRTHTGEKPFACDICEKKFSKKIELVDHKRSHREKKPIRRRSYVCDVCGKIFLEFSSLKIHKLIHTGERPFKCNFCVKTFRQSSTLRKHKKIHIGKKKHVCDTCGKKFLLRQELLTHRRIHTGYKPYSCFICDKKFAQLGGLKIHRKLHADEKYHFCKDCDEKFIDRRDLYVHKLVHTGGTMVECDLCDRKFCRKDSINRHKERRHKLKYHNCEDCNEKFIGRRDLYAHKLVVHTGRVMVECDLCDRKFTRKAGLKGHKERSHKLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -