Ccar019564.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:124166515-124169286[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9.4e-06 0.0002 22.0 1.3 2 23 210 231 209 231 0.97 2 21 6e-05 0.0013 19.4 0.2 1 23 242 264 242 264 0.97 3 21 0.0003 0.0065 17.2 0.5 1 23 270 293 270 293 0.98 4 21 0.13 2.7 9.0 0.8 3 23 300 321 299 321 0.92 5 21 0.00032 0.0068 17.2 1.8 2 23 327 348 327 348 0.97 6 21 3.3e-05 0.0007 20.3 0.8 1 23 354 377 354 377 0.97 7 21 0.0037 0.08 13.8 2.0 2 23 385 407 384 407 0.93 8 21 9.4e-06 0.0002 22.0 0.6 2 23 457 478 456 478 0.97 9 21 0.088 1.9 9.5 0.9 1 23 489 511 489 511 0.95 10 21 0.19 4.1 8.4 0.8 1 23 517 540 517 540 0.97 11 21 0.031 0.67 10.9 0.6 2 23 547 569 546 569 0.92 12 21 0.00063 0.014 16.2 1.2 2 23 575 596 575 596 0.96 13 21 8.3e-05 0.0018 19.0 0.8 1 23 602 625 602 625 0.97 14 21 0.00071 0.015 16.1 1.8 2 23 633 655 632 655 0.96 15 21 0.00078 0.017 15.9 1.3 1 23 662 684 662 684 0.98 16 21 6.4e-06 0.00014 22.5 2.2 1 23 690 713 690 713 0.97 17 21 0.00036 0.0078 17.0 2.5 2 23 760 782 759 782 0.96 18 21 0.021 0.44 11.5 0.0 3 20 793 810 791 812 0.95 19 21 0.047 1 10.3 5.0 1 23 820 843 820 843 0.96 20 21 0.0029 0.063 14.1 3.2 1 23 849 871 849 871 0.98 21 21 1.3e-05 0.00028 21.6 0.7 1 23 877 899 877 899 0.98
Sequence Information
- Coding Sequence
- ATGAATCATTTAAATATTGAAGATTTTAATATAATATGCCGAATATGTTTAATATCGAAAGAAAATATGACAAGTTTAACAAATGATGAAAATCAAATGATGATTATCATAAAATGTATTTCAAGATTCAAAAAATTACAAACCGATAACTTACCACAACAAATATGTACAGAATGTTTATCACAATTACGCATTTCGTATGATTTCAAGCAAAAATTTATATTATCTGAGAAAATATTGTACGATCTACTTTCAAAAACAAATCAATCGAATAAAACTAAACTAGATTTGAGAAGCAATTTCGATGAAAATTTAGTTTTATTCAGACAAGAAGATGAGTCTGGACAAACTATTAAAAAAGAAATTGATGAAAATTGGGACAATGAACATGAATTGAATCAAAAGAAAATCGAATTTGAACAAATTAATGTAGTTGAGAAATTGAAATCGCCTGAAATTGATGAAAATTGGGATAATAAAAATGAAAATGACCCTAATCAAAAGAAAATTAATGACGTTGAGGAGGAAAACAAAAAGGATGAATTAAATCAAAAGAAAATCGAGTTAGTGAAATCAATGTATGAATTTTTATGTGCGGATAAGCCATGTATTAAATTAGACGATTTAGTTTGTAATATGTGTAATCGAAATTTCTCTACGCGTGAAAATTTACTCAAACACGTTAAAACTCATGCTAAAAGTATTGACGGTTTTCAATATTCACACATTTGTCCACTTTGTGATGAAGGATTTTATTCGCTAAGTAGCTTAAATGGACACATGAGAGTTCATTCCTATGGTCCATCATATCGCTGTGATTTATGCCCAAAAGTTTTCATAAAACTAGATGCATTTGCGAAACATTATAGCACGACACATAATGCAAAACCAGTTGATTGCACTAAATGTTCAAAAAAATTTGTTCACCCCTTACTGGTGGAACGTCATGAGCAAGAAGCTCACAATGAAGTGGAACGTGTATGTAATGACTGCGGTGAAAAATTTTCAACTAAATTAAGTTTTAGACAACATCGTCTTAAACATTACAGACAAGGAATATTCTCTTGCATGAATTGTGATAAAACTTACACAAGATTGGCAACATTAAGGAAACACGTTCGTATTGCACATAAAAACGTGCGAGCTTATCTCGAATGCAACAAATGTTTGAAAAAATTTGTACATCCGATACAATTAAAGCGTCACGAACAATTATTTCACAGTCGTACAGAAACAAACTACACATGTGATGTTTGTGATGCAAAGGACGGCAACAATAAGGCCGAATTGAATCAAGACACAACTGAATTAGCAAAATCAATGTATGAATTCTTATGTGCGGATAAACCATGTAAATTAGACGAATTAGTTTGTAATATATGTAAACGAAATTTCTCTACGCGTGAAAACTTACTCGCGCACGTTAAAACTCATGCTAAGAGTATTGTCGGTTTCGAATATTCACATTTTTGTACACTCTGTGATGAAGGTTTTTATTCTATAAGAAGTTTAAATGGACACTTAGCACGTCATTCTTATGGTCCATCATATCATTGTGATTTATGCTCAAATGTTTTTGTAAAATTAAATGCATTAGGGAAACATTATAGTACGGCACATGATGATGCAAAGCCCGTTGAATGCACTAAATGTTCAAAAAAATTTCCACATCCCTTACTAATGGAACGTCATGAGCAAGAAGCTCACAATGAAGTGGAACGCGTATGCAATGATTGCGGTGAAAAATTTTCAACTAAATTAAGTTTCAGACAACATCGAATTCAACATTACAAACAAGGATCATTCTCTTGCATGAACTGTGATAGAACTTATACAACATTGGAGACATTAAAAAAACATGTTCGTATTGCTCATAAAAACGTTCAAGATCATCTTGAATGTAAAATATGTTTAAAAAAATTTATACATCCGATACAATTAAAGCGGCACGAACAAACATTTCACAGACGTAAAGAAAAAAATTACGTATGCGATGTTTGTGGAGAAAAATTTGTGCTGTCTTTTAAATTAAAGCAACATAAAAAAAAACATGTTGATTCAGAACTGTTTAAATGCTCATACTGTGATAAAACTTATAATGCACAACAAAATTTAAAACGTCATATTCGTTTACAACATGCGAACATGGGTAAAAATCCCGAGGAAGTAGAACAGACAGCAGCGCAAACTGATATCGATTCTCAAGTATGTTTTATTTGTGGTAAACATGTTAAATATCTTAAAATACATTTAAAATCGCATGCTAAATCCGAGAATAAATGTCCGGTGTGTTCAAAAATATATACTTCTGAATACTGCTTACAAAAACATATGAAACTTCAACATCCAGAGGATGGTATTGGAAAAAGAGTTATTTGTCCAATATGTAATAAAGTATTAGCTGAACCTGGTTATTTAGCAAAACACATGGAATGCGTTCATTCAACAGTTAAACGACATGAGTGTACATTTTGTGAGAGCAAATATAAATTGAAATCACATCTTAATCAACATATACGAAACGTACATAATAATGAAAGACCTCATAAGTGTACAATTTGTGAAATGGGATTTTTTGCAAAATTTTCTTTACAATCACATATGAGAAAACATGAGGGTAAAAGACCGTATGCCTGTAATAAGTGTGATGAATCTTTCAGAAAGAAAAATGGTTTGGTTAATCACATGAAAATTCATTCAAGTGGCTTAGATATATAA
- Protein Sequence
- MNHLNIEDFNIICRICLISKENMTSLTNDENQMMIIIKCISRFKKLQTDNLPQQICTECLSQLRISYDFKQKFILSEKILYDLLSKTNQSNKTKLDLRSNFDENLVLFRQEDESGQTIKKEIDENWDNEHELNQKKIEFEQINVVEKLKSPEIDENWDNKNENDPNQKKINDVEEENKKDELNQKKIELVKSMYEFLCADKPCIKLDDLVCNMCNRNFSTRENLLKHVKTHAKSIDGFQYSHICPLCDEGFYSLSSLNGHMRVHSYGPSYRCDLCPKVFIKLDAFAKHYSTTHNAKPVDCTKCSKKFVHPLLVERHEQEAHNEVERVCNDCGEKFSTKLSFRQHRLKHYRQGIFSCMNCDKTYTRLATLRKHVRIAHKNVRAYLECNKCLKKFVHPIQLKRHEQLFHSRTETNYTCDVCDAKDGNNKAELNQDTTELAKSMYEFLCADKPCKLDELVCNICKRNFSTRENLLAHVKTHAKSIVGFEYSHFCTLCDEGFYSIRSLNGHLARHSYGPSYHCDLCSNVFVKLNALGKHYSTAHDDAKPVECTKCSKKFPHPLLMERHEQEAHNEVERVCNDCGEKFSTKLSFRQHRIQHYKQGSFSCMNCDRTYTTLETLKKHVRIAHKNVQDHLECKICLKKFIHPIQLKRHEQTFHRRKEKNYVCDVCGEKFVLSFKLKQHKKKHVDSELFKCSYCDKTYNAQQNLKRHIRLQHANMGKNPEEVEQTAAQTDIDSQVCFICGKHVKYLKIHLKSHAKSENKCPVCSKIYTSEYCLQKHMKLQHPEDGIGKRVICPICNKVLAEPGYLAKHMECVHSTVKRHECTFCESKYKLKSHLNQHIRNVHNNERPHKCTICEMGFFAKFSLQSHMRKHEGKRPYACNKCDESFRKKNGLVNHMKIHSSGLDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -