Ccar021401.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997754.1:124161241-124164899[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3e-05 0.00064 20.4 0.4 1 23 305 327 305 327 0.98
2 16 0.0078 0.17 12.8 3.3 1 23 333 355 333 355 0.97
3 16 4.6e-06 9.8e-05 23.0 3.8 1 23 361 383 361 383 0.98
4 16 3.6e-06 7.8e-05 23.3 0.8 1 23 389 411 389 411 0.98
5 16 0.00014 0.0029 18.3 1.6 1 23 416 438 416 438 0.98
6 16 0.0013 0.028 15.3 6.3 1 23 444 466 444 466 0.98
7 16 0.00025 0.0054 17.5 4.7 1 23 472 494 472 494 0.97
8 16 0.00012 0.0027 18.5 3.3 1 23 500 522 500 522 0.98
9 16 6e-05 0.0013 19.4 2.0 1 23 528 550 528 550 0.98
10 16 2.3e-05 0.00049 20.8 2.8 1 23 556 578 556 578 0.98
11 16 0.00035 0.0075 17.0 1.5 1 23 584 606 584 606 0.98
12 16 0.003 0.064 14.1 1.0 1 23 612 634 612 634 0.98
13 16 7.3e-06 0.00016 22.3 0.3 1 23 640 662 640 662 0.97
14 16 2.1e-06 4.5e-05 24.0 1.6 1 23 668 690 668 690 0.98
15 16 4.7e-05 0.001 19.8 0.7 1 23 696 718 696 718 0.98
16 16 3.2e-07 6.8e-06 26.6 1.5 1 23 724 747 724 747 0.97

Sequence Information

Coding Sequence
ATGGAACTCGGTGAAAATAGTCAAAATCTTCGCGGAAAAAGTTCGTACAAGTATTGTTTTGTACCCCAATGCAAAAACACATCGAAAAGCACCCCAGAAAAGCTGTTTATTTCGGTGCCCAAAGGAGATAAACGAGCTAAATGGGTAAAACAAGTTCGATACCCATTGGATGTTTCAGCAACATCACGATTGCATTGTTGTGAAGATCACTTTGACTTGCAAAACGACTTGAAAAACTATATGAGGGTGAAGCTTGATCCGAATGCGAACATTCTCTTGAAGGATGATGTCCTGCCAACGTTTTTCGACTGCCAAAGTGACCGAAAAAGAGCATGGACCTCAACAGAAAGACCAGGGGCCAAAAAATTACGTCACGCAAGAACGTTAGCAGAAATTGAAGAAGACCTTGCACGCTCAATTTCTTTAACGTCCGCTGGAGCTGTTGGTGAAACGACGGTCGACGAGTCAACGACGGCTTCCTCAACATCTGATTTTTTTCCGCTTGACACTTCCGGTTCTTCTGCAATCACCGAGGTTGGGACCAGAAGCTTAGATGTTCACTTAATCATTGAAGAAAAGATTAAACTTGAAAAACAACTTAATACAGAACTCATAATTAAAGAGGAAATATTAGAAGACAGTGATGTTAAAATGGAAATTAAAGGAATTACAGAAGTTCGCGAAGATAGTTTTTCAATGGAATGTGGACCAATTAAGAATGAAGTTCTGGAAGATAGTGTTACAATGGAATATGTAGGAATTAAATGTGAAAAACTAGAAATAAAATCTGAACGAAGTGAATTAGAACCAGAGCAAGTTTATAATGAAGAAAAACAATATTCATGTGATCAAACATTTAATAATAGTAATCATTTAATTGAAAATAAACGGGATCGTTGTGGTGAAAAATCATTTTCATGTGATATTTGTAATAAAACATTCAATTATAAGCAAGGTTTAGTTGAACATATACAAATTCACACTGAAGAAAAATCATTTTCATGTAATTTTTGTGAAAAATTATTTAAAACTAAAAGGTATTTAGATAAACATAAATTAATTCATAGGGAAGAAAAAAAATTTACGTGCGATATTTGTAATAAAACATTTCGACAACAAACTCATTTAGTTAGTCACAAACGGGTTCATAGTGGTGAAAGACCATTTTCATGTGATATTTGTAATAAATCGTTTCCTTCACGTGGTAATTTAAGTAAACATAAACAAATTCATAGTGAAAAAGGTTTTTCGTGTGATTTTTGTAATAAAACATTCAATTATAAGCAAGTTTTAGTTGAACATATACGAACGCACACGGGAGAAAAACCATTTTCATGTGATTTATGTGAAAAATCATTTAAAACTAAAAGGTGTTTATATAAACATAAATTGACTCATACGGGGGGAAAAAAATTTACATGTAATATTTGTAACAAAAAATTTAGTACAAAAACTCATTTTGTTGATCATAAAAGTATTCATAGTGGTGAAAAACCATATTCATGTGATATTTGTAATAAAACATTTCATTTTCGAGCTAATTTAAATAATCATAAACAAATTCATAATGCAGGCGGACTATTTTCATGTAAATTTTGTAATAAAACATTCGGTTATAAACAAACTTTAGCTCAACATATACGAATTCACACTGGTGAGAAACCATTTTCATGTGATTTTTGTGATAAAACATTTCGTCAACTTAATAATTTAAATTCTCATAAACGGTTGCACAGTGGTGAAAAGCCATTTTCATGTGTTATTTGTAATAAAAATTGTACCACACAAACGGCTCTAACCATACATGAACGAATTCATAGTGCAGAAGAACTGTTTTCTTGTGATATTTGTAATGCAAAATTCAAATATAAACAAGTTTTAGTTCAACATAAACGAATTCACACCGGAGAGAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTTTGCAAGGTAGTTTAGTTCAACATCAACGTATTCATAGTGGAGAGAAACCATTTTCATGTGACATCTGTAATAAAAGATTTACTCAGAAAAATAATTTAATTGATCATAAACGAATTCATACGGGAGAAAAACCATTTTCATGTGATTTTTGTGATAAACCATTTAAAAATAAGAATGGTTTAGTTATACACAAACGAATTCATACCGGAGAGAAACCATTTTCATGTGATATTTGTAATAAACCATTTAGTCAGAAAAGTCATTTAGTTCAACATCAAAGGGTCATTCATAATAAAGAATGA
Protein Sequence
MELGENSQNLRGKSSYKYCFVPQCKNTSKSTPEKLFISVPKGDKRAKWVKQVRYPLDVSATSRLHCCEDHFDLQNDLKNYMRVKLDPNANILLKDDVLPTFFDCQSDRKRAWTSTERPGAKKLRHARTLAEIEEDLARSISLTSAGAVGETTVDESTTASSTSDFFPLDTSGSSAITEVGTRSLDVHLIIEEKIKLEKQLNTELIIKEEILEDSDVKMEIKGITEVREDSFSMECGPIKNEVLEDSVTMEYVGIKCEKLEIKSERSELEPEQVYNEEKQYSCDQTFNNSNHLIENKRDRCGEKSFSCDICNKTFNYKQGLVEHIQIHTEEKSFSCNFCEKLFKTKRYLDKHKLIHREEKKFTCDICNKTFRQQTHLVSHKRVHSGERPFSCDICNKSFPSRGNLSKHKQIHSEKGFSCDFCNKTFNYKQVLVEHIRTHTGEKPFSCDLCEKSFKTKRCLYKHKLTHTGGKKFTCNICNKKFSTKTHFVDHKSIHSGEKPYSCDICNKTFHFRANLNNHKQIHNAGGLFSCKFCNKTFGYKQTLAQHIRIHTGEKPFSCDFCDKTFRQLNNLNSHKRLHSGEKPFSCVICNKNCTTQTALTIHERIHSAEELFSCDICNAKFKYKQVLVQHKRIHTGEKPFACDICNKTFTLQGSLVQHQRIHSGEKPFSCDICNKRFTQKNNLIDHKRIHTGEKPFSCDFCDKPFKNKNGLVIHKRIHTGEKPFSCDICNKPFSQKSHLVQHQRVIHNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-