Ccar022107.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:99421967-99425058[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.2e-05 0.00048 20.8 1.8 1 23 287 309 287 309 0.97 2 18 0.067 1.4 9.9 1.0 1 23 315 337 315 337 0.97 3 18 5.6e-05 0.0012 19.6 1.4 1 23 358 380 358 380 0.98 4 18 0.00015 0.0033 18.2 5.2 1 23 386 408 386 408 0.98 5 18 4.1e-06 8.8e-05 23.1 2.9 1 23 414 436 414 436 0.98 6 18 5.5e-07 1.2e-05 25.9 0.9 1 23 442 464 442 464 0.98 7 18 0.0018 0.039 14.8 4.6 1 23 470 492 470 492 0.98 8 18 0.0042 0.091 13.6 3.7 1 23 498 520 498 520 0.98 9 18 2.2e-06 4.7e-05 24.0 0.7 1 23 526 548 526 548 0.96 10 18 0.00021 0.0046 17.7 2.1 1 23 554 576 554 576 0.97 11 18 2.2e-06 4.8e-05 23.9 0.9 1 23 582 604 582 604 0.98 12 18 5.1e-06 0.00011 22.8 1.2 1 23 610 632 610 632 0.96 13 18 0.029 0.63 11.0 1.5 1 14 638 651 638 655 0.90 14 18 5.9e-05 0.0013 19.5 0.5 1 23 684 706 684 706 0.95 15 18 0.00012 0.0025 18.5 3.2 1 23 712 734 712 734 0.98 16 18 0.0068 0.15 13.0 1.3 3 23 739 759 738 759 0.98 17 18 1.7e-06 3.7e-05 24.3 2.7 1 23 764 787 764 787 0.96 18 18 0.015 0.32 11.9 0.8 1 21 792 812 792 813 0.94
Sequence Information
- Coding Sequence
- ATGTCAAGAGATTGTTGCGACATTAATAATCCGATTCTAATAAACAATGCGATGGTTTTAAAAAAACAAAAAAATAATTCGATGATACTTAAAAATGAAAACAGTACAATTGAACAATTGCATTCTGAATTGATAAATAAACATGCTGCAGATGAATTATTAGAAATATCAAATTCAAGTGATGTTAGCGATGAAACATTTTCGCAACCAAATAATCTACTTGCGTTTCAAGAAAATTTTGTTTCAAGTGATGTTTATGAGAAAACAAATGTATCTCAAAGTAATTTTGTAATTAAAAATGAAAACATTAAAATTTCCGAACAACTTCATTCAGTGTTAATTATTAAAAATGATGTTAGTGATGAAATATCAGAAGTAAGTAATTCGAGTGACAGTGAATTGGGAATACTTGGGCAACAAACCAATATACTTGAATGTGAACGAAATTATAGTACAGACGATACGGGAGAAAAAGATATTGCGTGTGATGAAAAATTTAATGATGCAAATAACTCAACGGTCGTTAAAAATAAAACTATTAAAGATGAACAACTGCATACAGAGATAATTATTAAAGATGATGCTGAAGAGGGTACTAGTGAAAGTGAAATATTAGAAGAAAATAATTCGAGTGATGATGAAATGGAAATATTTGGGCAACAAACCAATATACTTGAATGTGATGAAAAATTTAATGATGCACATAACTCAGCGATCGTTAAAAATGAAAGTATTCAACAACTGCATACAAAGCTAATTATTAAAGATGATGCTGAAGAGGGTACTAGTGAAAGTGAAATATTAGAAGATTCAAGTGATGTTGGCTATGAAACATATATTCACGCTAGAAACAAAACATTTTCATGTAATGTTTGTGATAAAGTATTTATGCGGCAAAAAAAATTAAATAGACATAAACTTATTCATACTTTAAAAAAAACATATTCATGTGAAATTTGTAAAATGTCTTTTTTGGGACATGCCCAATTAGTTGTTCATCAACGATTTCATAATGTAAAGGTTGTTCTTGAACGTATTCATATTACTGGAAGTCTTCCGAGAGAAAGAAAATTTTCATGTAATGATTGTGACAAATCATATTTTCGGTATACTGATTTAGAAATACATAAACGTATTCATACTGGAGAAAGGCCTTTTTCATGCAATGTTTGTAAAAAATCATTTCGCGCAAATAGTACTTTAAATCATCATAAAAAAACGCATACTGGAGAAAAGCCTTTTTCATGTAATGTTTGTAAGAAATCATTTTACAAAAATGGTAATTTAATTAGACATAAAAGAACGCATACTGGAGAAAAACCTTTTTCATGTGATGTTTGTGATAAATCATTTACGTCCAAGGCCAACTTAGTTGAGCACAAAAGAACTCATAGTGGAGAAAGACCGTTTTCATGCGACCTCTGTGATAAAACATTTAAGTGTCGATCTGGTTTACGAAGACACAAACGATGGCACACTAGAGATAAAACTTTCTCATGTTATGTTTGTCATAAAAGATTTTTGCAAAAAGGCAATTTATACAGGCATGAACGCATTCATACAAGGGAAAAACCTTATTCATGTGACGTTTGTGATAAAACATTTAGCTATTCAAGTAATTTAGTTAGACATAAAGTTGTTCACACTGAAGAAAGGCCATTTTCCTGCGATGTTTGTGATAAATCGTTTAAAACGAAATACGAAACAACTATGCACAAACAAATTCATACTGGAAAAAAACCTTTTTCATGTGATGTTTGTGATAAATCATTTACGTCCAAGGGCAACTTAGTTGATCACAAAAGAAACCATACCGGAGAAAGACCTTATTCATGTAAAGTTTGCAATAAATCATTTAGTTCTCAAAACAATTTAGCTAAACATAAAGTTATTCACATTGAGAAAAGGCCATATTCATGTGATGTTTGTGATAAATCATTTAAAACGAAACAAGAGAAAAAAAATTTTCGTGTATTATTTGTAAAACAGCATTTGCTTATCGAAGCAGCTTTAAGCAAATATAAAATAATTCACACTGGAGTGAGACGTTTTTTGTGTGATATTTGCGATAGACCTTTTAAAACGAAAAAAGATTTAGTTCAACATGAACGACTCCATAGTGGTGAAAAACCATTTGTATGTAATGTTTGTAATAAAGCATTTGCACAACACAGCAGCTTCTACAGACATAAAAAAGTTCATAATAAGATACTTTGTGATATTTGTGGTAAAATATTTAAGTGTGAACAGGATTTAAATAAACATGAACGGATACATGGTGAAAATCCATTTTCTTGTGAAATTTGTAATAAATCATTTAAAAATCAAAGAAATTTAACAAATCACAAACGATATATTCATAGAACAAAATTATTTTCATGTGATGTTTGTAAAAAATTATTTTCCATACATAGTCAATTAGTTCGACATAAACAGATTCCAGTAAAATAA
- Protein Sequence
- MSRDCCDINNPILINNAMVLKKQKNNSMILKNENSTIEQLHSELINKHAADELLEISNSSDVSDETFSQPNNLLAFQENFVSSDVYEKTNVSQSNFVIKNENIKISEQLHSVLIIKNDVSDEISEVSNSSDSELGILGQQTNILECERNYSTDDTGEKDIACDEKFNDANNSTVVKNKTIKDEQLHTEIIIKDDAEEGTSESEILEENNSSDDEMEIFGQQTNILECDEKFNDAHNSAIVKNESIQQLHTKLIIKDDAEEGTSESEILEDSSDVGYETYIHARNKTFSCNVCDKVFMRQKKLNRHKLIHTLKKTYSCEICKMSFLGHAQLVVHQRFHNVKVVLERIHITGSLPRERKFSCNDCDKSYFRYTDLEIHKRIHTGERPFSCNVCKKSFRANSTLNHHKKTHTGEKPFSCNVCKKSFYKNGNLIRHKRTHTGEKPFSCDVCDKSFTSKANLVEHKRTHSGERPFSCDLCDKTFKCRSGLRRHKRWHTRDKTFSCYVCHKRFLQKGNLYRHERIHTREKPYSCDVCDKTFSYSSNLVRHKVVHTEERPFSCDVCDKSFKTKYETTMHKQIHTGKKPFSCDVCDKSFTSKGNLVDHKRNHTGERPYSCKVCNKSFSSQNNLAKHKVIHIEKRPYSCDVCDKSFKTKQEKKNFRVLFVKQHLLIEAALSKYKIIHTGVRRFLCDICDRPFKTKKDLVQHERLHSGEKPFVCNVCNKAFAQHSSFYRHKKVHNKILCDICGKIFKCEQDLNKHERIHGENPFSCEICNKSFKNQRNLTNHKRYIHRTKLFSCDVCKKLFSIHSQLVRHKQIPVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -