Ccar005509.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:49847362-49855416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0026 0.057 14.3 0.4 2 23 264 285 263 285 0.96 2 18 0.00022 0.0047 17.7 2.5 2 23 292 313 292 313 0.98 3 18 0.001 0.022 15.6 1.5 1 23 319 342 319 342 0.97 4 18 6.6e-06 0.00014 22.5 1.5 1 23 348 370 348 370 0.97 5 18 1.4e-05 0.0003 21.4 0.7 1 23 376 398 376 398 0.98 6 18 9.9e-05 0.0021 18.8 2.8 1 23 404 426 404 426 0.95 7 18 0.00063 0.014 16.2 2.4 1 23 432 454 432 454 0.98 8 18 4.8e-06 0.0001 22.9 0.3 1 23 460 482 460 482 0.98 9 18 0.00012 0.0026 18.5 3.2 1 23 488 510 488 510 0.99 10 18 0.0027 0.059 14.2 0.2 2 23 756 777 755 777 0.96 11 18 2e-05 0.00043 21.0 3.3 1 23 783 805 783 805 0.98 12 18 6.4e-05 0.0014 19.4 0.6 1 23 811 833 811 833 0.99 13 18 4.2e-05 0.00091 19.9 0.2 1 23 839 861 839 861 0.98 14 18 0.0062 0.13 13.1 1.8 1 23 867 889 867 889 0.98 15 18 0.0013 0.027 15.3 3.0 1 23 895 917 895 917 0.96 16 18 0.00018 0.0038 18.0 5.1 1 23 923 945 923 945 0.98 17 18 4.1e-05 0.00088 20.0 0.1 1 23 951 973 951 973 0.98 18 18 0.009 0.19 12.6 8.2 1 23 979 1001 979 1001 0.98
Sequence Information
- Coding Sequence
- ATGGATGAATATATTCGATTATCAAATATACAAGCAAATTTTCAGAATATTTGTAGAACTTGTTTAATAGAAAAACATAACTTACAAGCAATTTTCCGTCTTGTAGATTTATTAAAAGAATGCACTTCAATACAAATTGATCTGGAGGACGATTTACCAAAATTAATTTGCATTGAATGTACTAACAAACTAAATACTGCGTTTGAATTTAAAAAACAATGTGAAGTGTCTCAAAAAATTTTGTCCCAACTCAGAGAATTTGGAGTAACGCCTGTTAAACTTGAAAGCAATGGTTTAAATTCTCAACAATTAGAAGCAAATGAAATCGACATTAAATCCGAGGATTCTTATAATATAAACGAGGATAATTCCGATACATGCAATGAAAACAATAAATATAAAATTAACAGTGTATTTAGTTATGTGAATATTAAACCGTTTAATAATGAAGATGATTTTATTGAAACAAGCGAAAATAAAAATAATTTGGATGCTTCAAAGAAACAAAATATTAACTTAGATAGTACAAATACTAATATTGGGAAGAATAGTTTACTTTCTTCTGACCTTGATGAGCAACCGTTAAACAAAAGACTAAAGTTAGAAAACAGTGAATCAACTCCTGAAGACAACCATTGTGAAGTTTCCAATAAAAGTAGTGATGAAATTGTAAAGTTAAGAAAAAATAAAGGTAAAAAAAGTACCAAAGGTAATAAAAAATCTAGTAAACAAAAGGACAAGAATAAATTGGAGGTGATAAAAGATGATGATACAATTCAAAATGGACTACCATGCCCACAATGTAAAAAATGTTTTGAATTAGATGTAGATTTGGAAATTCATATGCTAAAACATCAAAAATATAATGATAATACTTGTCCTAAATGCTCAAGAACTTTCGAAAACGAAAAAAATTTAAAACAGCATTTTAATACCCACATGATTAACAAACCGTACAAATGCAATGTTTGTGATAGAAGCTTCGCAGGATCATGTGATCGTAATCGACATATTTTACGAATTCATACGGGTGAAAAACCTTTCATATGTTCATCATGTGGTAAACGATTTGCAGATTCAAGTAAATTATCACGTCATATGAAATATCATCTTGATGTTAAAAAATTCATCTGTACAGTTTGCTCTAAATCATTTATGTTTTCGTCAGATCTTCAAAGTCATATACGAGTTCATTCTGGTGAAAAACCTTATTTATGTACAGAATGTGGAAAAAGCTTTAGTCATTCGAACGGATTAAAACTACATAAACTAAAACATACAGGAGAACGTCCATTTCCATGTACAGAATGTGAAAAGAGTTTTCTCTTAAATAAACATTTAAAAGTTCATATGCGTTCTCATACAGGTGAAAAGCCATATGTGTGTAAAATATGCGATATGGCCTTTACAAGATCAGATTATCTTGTTGTGCACACCCGATCACATACTGGGGAGAGGCCGTATTCTTGTAAGATTTGTGAAAAGACTTTTAAATCAAGCAAAGATGTATATCAACATAAACGAACACATAATAAAGGAAGAACCTGTTTGACAGATAAAGATAATTTACAAACTATTTTTCGCATTATAGATTTATTAAAAGAATGCACTTCAATACAAATTGACATAGAGGATGATTTACCAAAATTAATTTGCCTTGATTGTGTTAATAAACTGAATAATGCATTTGAATTTCGAAAACAATGTGAAGTATCTCAAAAAATTTTGTTACAACTTAGAGGAATTGACAAAACACCTGTTATATTTCAAAATAAAGTTTCAAACATTCGATTACATAAAACCGAAAATTTAGATATAAACGATATCGATATTAAATCTGAGAGTTCTTATAATATAAATGATGATAACTCGGATACATGTGATGAAAATAATAAACTTAAAATTAATGATATACTTAATGTTGCGAAAACAAAGCTAAGTAAAGTAGATGGTTTTTCTGAAACTAATGTAAATGCAACTAAAACTATTTTCGATATTTCTAAGAAAAAAAATAATAATTTTGAAAATAAAAGTTCTAACGCAGTGAATAATAGTCCGTCTTTTGATTTTGATGACCAACCTTTAAGTGAAAGATTAAAGATCGAAAACAATGATTCAGTTCATGAAGATAACGATTGTGATATCTCTGATCAATGTAACAATGAGCCTGTAATTTTGAGAAAAAATAAATCTAATAAAAAAACGAAACAAAAAGATAAACAAAAATTAAGTGTGAAAACCAAAGACGACAAAACAGATGGACTCCCATGTTCTCAGTGTGATAAATACTTTGAATTTGAAGTAGATCTAGAAATGCATATGTTGAAACATCAAAAATTTGACAATTTTAGTTGTCCTAAGTGTCCAAAGATTTTTGATAACTCGCACAGTTTAAAACGACATTTTAACACACACATGATTAACAAGCCATATAAATGCAAGTTTTGTGATAAAAGTTTTGCTGGAGCTGGTGATCGAAATCGCCATTTAAGAATTCATACCGGTGAAAAACCATACATATGCTCATCGTGCGGTAAGCGATATCCAGATTCTAGTGGATTATCAGCACATATGAAGTACCATATTGGTATAAAAAGTTTTGTTTGTACAATTTGTTCCAAATCATTTTTGTTTCCATCAGAACTTCAATGTCATATGCGTGTGCATACTGGTGAAAAACCTTATTTATGTACTATTTGTGGAGATAGTTTTAGTCAATGCTACAGCTTAACAGTACATAAACGAAAACATACTGGAGAGCGTCCGTATTCATGTACAGAATGTGATAAGAGTTTTAGTTCAAATAAACAATTAAAATTTCATATGCATACACATACAGGAGAAAAGCCATATATTTGTACACTTTGTGATGCCAGTTTTGCTAGACCAGAGTCTCTTGTTATACACACACGAACACATACAGGAGAAAGACCCTATTGTTGTAATTTATGTGAAAAAAAATTTATGTCAAGTAAACATTTATCACAACATAAGCGAACACATAATAAAGAAAAATAA
- Protein Sequence
- MDEYIRLSNIQANFQNICRTCLIEKHNLQAIFRLVDLLKECTSIQIDLEDDLPKLICIECTNKLNTAFEFKKQCEVSQKILSQLREFGVTPVKLESNGLNSQQLEANEIDIKSEDSYNINEDNSDTCNENNKYKINSVFSYVNIKPFNNEDDFIETSENKNNLDASKKQNINLDSTNTNIGKNSLLSSDLDEQPLNKRLKLENSESTPEDNHCEVSNKSSDEIVKLRKNKGKKSTKGNKKSSKQKDKNKLEVIKDDDTIQNGLPCPQCKKCFELDVDLEIHMLKHQKYNDNTCPKCSRTFENEKNLKQHFNTHMINKPYKCNVCDRSFAGSCDRNRHILRIHTGEKPFICSSCGKRFADSSKLSRHMKYHLDVKKFICTVCSKSFMFSSDLQSHIRVHSGEKPYLCTECGKSFSHSNGLKLHKLKHTGERPFPCTECEKSFLLNKHLKVHMRSHTGEKPYVCKICDMAFTRSDYLVVHTRSHTGERPYSCKICEKTFKSSKDVYQHKRTHNKGRTCLTDKDNLQTIFRIIDLLKECTSIQIDIEDDLPKLICLDCVNKLNNAFEFRKQCEVSQKILLQLRGIDKTPVIFQNKVSNIRLHKTENLDINDIDIKSESSYNINDDNSDTCDENNKLKINDILNVAKTKLSKVDGFSETNVNATKTIFDISKKKNNNFENKSSNAVNNSPSFDFDDQPLSERLKIENNDSVHEDNDCDISDQCNNEPVILRKNKSNKKTKQKDKQKLSVKTKDDKTDGLPCSQCDKYFEFEVDLEMHMLKHQKFDNFSCPKCPKIFDNSHSLKRHFNTHMINKPYKCKFCDKSFAGAGDRNRHLRIHTGEKPYICSSCGKRYPDSSGLSAHMKYHIGIKSFVCTICSKSFLFPSELQCHMRVHTGEKPYLCTICGDSFSQCYSLTVHKRKHTGERPYSCTECDKSFSSNKQLKFHMHTHTGEKPYICTLCDASFARPESLVIHTRTHTGERPYCCNLCEKKFMSSKHLSQHKRTHNKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -