Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997756.1:87908131-87910269[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00073 0.016 16.0 1.8 1 23 75 97 75 97 0.98

2 16 0.00016 0.0036 18.1 2.8 1 23 103 125 103 125 0.97

3 16 1.3e-05 0.00027 21.6 0.4 1 23 131 153 131 153 0.98

4 16 2.7e-05 0.00058 20.5 3.0 1 23 159 181 159 181 0.96

5 16 0.0002 0.0043 17.8 1.0 1 23 187 209 187 209 0.98

6 16 0.00025 0.0053 17.5 5.5 1 23 215 237 215 237 0.98

7 16 4.7e-05 0.001 19.8 1.9 1 23 243 265 243 265 0.96

8 16 0.00015 0.0032 18.2 0.5 2 23 271 292 270 292 0.97

9 16 6.4e-06 0.00014 22.5 0.8 1 23 298 320 298 320 0.98

10 16 8.8e-05 0.0019 18.9 2.6 1 23 439 461 439 461 0.96

11 16 4.2e-06 9e-05 23.1 1.9 1 23 467 489 467 489 0.96

12 16 1.6e-06 3.5e-05 24.4 3.9 1 23 495 517 495 517 0.96

13 16 0.00081 0.017 15.9 3.3 1 23 523 545 523 545 0.96

14 16 3.1e-05 0.00067 20.4 1.6 1 23 551 573 551 573 0.96

15 16 1.3e-05 0.00028 21.6 2.4 1 23 579 601 579 601 0.97

16 16 6.6e-07 1.4e-05 25.6 1.9 1 23 607 629 607 629 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00073	0.016	16.0	1.8	1	23	75	97	75	97	0.98
2	16	0.00016	0.0036	18.1	2.8	1	23	103	125	103	125	0.97
3	16	1.3e-05	0.00027	21.6	0.4	1	23	131	153	131	153	0.98
4	16	2.7e-05	0.00058	20.5	3.0	1	23	159	181	159	181	0.96
5	16	0.0002	0.0043	17.8	1.0	1	23	187	209	187	209	0.98
6	16	0.00025	0.0053	17.5	5.5	1	23	215	237	215	237	0.98
7	16	4.7e-05	0.001	19.8	1.9	1	23	243	265	243	265	0.96
8	16	0.00015	0.0032	18.2	0.5	2	23	271	292	270	292	0.97
9	16	6.4e-06	0.00014	22.5	0.8	1	23	298	320	298	320	0.98
10	16	8.8e-05	0.0019	18.9	2.6	1	23	439	461	439	461	0.96
11	16	4.2e-06	9e-05	23.1	1.9	1	23	467	489	467	489	0.96
12	16	1.6e-06	3.5e-05	24.4	3.9	1	23	495	517	495	517	0.96
13	16	0.00081	0.017	15.9	3.3	1	23	523	545	523	545	0.96
14	16	3.1e-05	0.00067	20.4	1.6	1	23	551	573	551	573	0.96
15	16	1.3e-05	0.00028	21.6	2.4	1	23	579	601	579	601	0.97
16	16	6.6e-07	1.4e-05	25.6	1.9	1	23	607	629	607	629	0.97

Sequence Information

Coding Sequence: ATGGCAAATAATTCATTTGAAGAAGTGGAAATTAAAAATGAAATTCAAGAAGACAGCAACAGTGTTAAATTGGAAGAAATACTAGAAAATGACAGTGAGTTTATTTTTAAACATGAACAAAATAATGAAAATGATACAATTAACAACGAAAATATTAAACTTGAAAGTGAAAATGAATTCAACACAGAATTATTTAGTGATGACAATGAAGATCAACAATCATTTTCATGTAATGCTTGTGACAAAACATTTTCCAAGCATTGGGGCTTAGTTCAACATAAACGCGTTCATACCGAAGAAAAACTATTTGTATGTGATATGTGTAATGAAACTTTTCATCGCAAAAGTAGTTTAGTTAAACATAAAATGTTACATAGTAGTGAAAAACCATTTTCATGTGATGTGTGTGAAAAAACATTTACTAGACAAGGGGGTTTACTTGAACATAAACGGATACATTCTGGAGAAAAACCATATTTATGTGATATTTGTAGTAAATCTTTTACTAATAAAAGCCATTTAGTTGGACATAAAAAGACTCATACCAAAGAAAAACCATTTTCATGTGACGTTTGTAATAAAACATTTTCTCTAAGCAGGCAATTAGTTGAACATAAAATGTCACATACTGGTGAAAAACCATTTTCATGTGATGTGTGTCATAAAACTTTTAATAGACATTGGAGTTTACTTGAACATAAACGGACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAGCAAGTCGTTTACCAATAAAAGATATTTGGTAGAACATAAAAAGACTCATACTAAAGAAAAAATTTCATGTGACGTTTGTAATAAAGCATTTCCTTTTCGCAGGCAATTAGTTAAACATAAACGAATACACTCCGAAGTTGAAGTATTTTCGTGTGATATTTGTAATAAATCATTTGCTAGACAAAATAATTTAGATGTACATAAACGATTACACAGCGGAGAAAAACCATTTTTATGTGATGAAGAAAGTGTTCCAGAAGTCATCATAAAAGATGAAGACTGTGTTAAACTTCCAGAATTGCAAATTAAAGATGAAATATTGGAAGAAAGCAACAGCGATAGCATGGAAGAGATGCCAGATAACAAAAGTGATATTAGTTGGGAACCTGAACCAAATCATGAAAATGGGAACAAATTAAATACAGAAATATTATCAATTAAAGATGAAATATTAGACCCGAGTGTTTTAGAACCACAAATTCAAATTACCAATAAACCATTTGTATCTCCAAAATTAAAAAGAAAAGGTTCAATCAAACATAAACGGACTTGTACGGAAGAAAAATCATTTTTATGTGATATTTGTAGTAAAGGATTTGATAGCCGAAGTCATTTAAAAGAACATAGCCGGACTCATACGGGGGAGAAACCTTATTTATGTGATATTTGTAGCAAGTCATTTACCCAAAGGAGTAGTTTAGTTAAACATAAAAGATCACACACGGGGGAGAGACCATTTTTATGTGATATTTGTAATAAAACATTTACGAGTCAAAGTCATTTAAATGAACATAAACGGACTCATACGGGGGAGAAACCATATTTATGTGATATTTGTAGCCAGTCTTTTACTCATGGAAGTAGTTTATTTAAACATAAACAGACTCACAGCGGAGAGAAACCATTTTCGTGTGATGTCTGCAATCAAACGTTTAATAGACAAAGTAGTTTAAATACACATAAACTTCTTCATACTGGTGAAAAACCATTTTCATGTGAGACTTGTAACAAAACATTTAATAAGAAAGGTAATTTAAATAAACATAAATTGATTCACAGTGGAGAAAAACCATTTTCATGTGACATTTGTAGTAAATCCTTTTCAGATAAAAGTAATTTAAGTAAACATAAAAGGGGTCACATTAAAAGTGATGTCTCACGAGCTCAATCCATTTTAACACACGTTTTTTCAAAGGCGCGTGTGCTTGAATGA
Protein Sequence: MANNSFEEVEIKNEIQEDSNSVKLEEILENDSEFIFKHEQNNENDTINNENIKLESENEFNTELFSDDNEDQQSFSCNACDKTFSKHWGLVQHKRVHTEEKLFVCDMCNETFHRKSSLVKHKMLHSSEKPFSCDVCEKTFTRQGGLLEHKRIHSGEKPYLCDICSKSFTNKSHLVGHKKTHTKEKPFSCDVCNKTFSLSRQLVEHKMSHTGEKPFSCDVCHKTFNRHWSLLEHKRTHTGEKPYLCDICSKSFTNKRYLVEHKKTHTKEKISCDVCNKAFPFRRQLVKHKRIHSEVEVFSCDICNKSFARQNNLDVHKRLHSGEKPFLCDEESVPEVIIKDEDCVKLPELQIKDEILEESNSDSMEEMPDNKSDISWEPEPNHENGNKLNTEILSIKDEILDPSVLEPQIQITNKPFVSPKLKRKGSIKHKRTCTEEKSFLCDICSKGFDSRSHLKEHSRTHTGEKPYLCDICSKSFTQRSSLVKHKRSHTGERPFLCDICNKTFTSQSHLNEHKRTHTGEKPYLCDICSQSFTHGSSLFKHKQTHSGEKPFSCDVCNQTFNRQSSLNTHKLLHTGEKPFSCETCNKTFNKKGNLNKHKLIHSGEKPFSCDICSKSFSDKSNLSKHKRGHIKSDVSRAQSILTHVFSKARVLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -