Ccar003910.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:70266093-70274939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00085 0.018 15.8 1.3 1 23 434 456 434 456 0.97 2 18 0.36 7.9 7.5 2.6 1 19 462 480 462 484 0.87 3 18 2.6e-05 0.00056 20.6 0.7 1 23 490 512 490 512 0.99 4 18 0.00014 0.003 18.3 3.5 1 21 518 538 518 540 0.94 5 18 0.00011 0.0024 18.6 4.6 1 23 546 568 546 568 0.99 6 18 0.00011 0.0023 18.6 5.3 1 23 574 596 574 596 0.97 7 18 6.9e-05 0.0015 19.3 7.6 1 23 602 624 602 624 0.97 8 18 4.2e-07 9.1e-06 26.2 2.7 1 23 630 652 630 652 0.98 9 18 0.00031 0.0067 17.2 6.7 1 23 658 680 658 680 0.97 10 18 6e-05 0.0013 19.5 5.5 1 23 686 708 686 708 0.97 11 18 2e-06 4.3e-05 24.1 2.8 1 23 714 736 714 736 0.98 12 18 2.8e-05 0.00061 20.5 7.9 1 23 742 764 742 764 0.98 13 18 1.4e-05 0.00031 21.4 6.7 1 23 770 792 770 792 0.98 14 18 7.3e-05 0.0016 19.2 7.7 1 23 798 820 798 820 0.98 15 18 4.7e-05 0.001 19.8 7.1 1 23 826 848 826 848 0.97 16 18 0.00035 0.0075 17.1 0.5 1 23 854 876 854 876 0.97 17 18 0.14 3 8.9 4.5 1 23 886 908 886 908 0.98 18 18 8.1e-07 1.7e-05 25.3 0.9 1 23 914 936 914 936 0.96
Sequence Information
- Coding Sequence
- ATGAATTCGAGTGATCATAATATTATACCGACTTCAGGTGCCCCACCGATACCCATTACGTCATCTGAGGATTCAAATCGTGGTAATCAACATCAGACCACGACCACAACAGTTCCAACGGATTTGAGAGTAAATCCAACTGCGTTAAATGCAGTTGCATTATCAAGTGTTGCCAAATATTGGGTACTCACTAATTTACTACCTGGACCAATACCACAGGTTTCAGTTTATGGCCTTCCAACCACCACAACAACCACAAAGGTTGAAAATGGAAAATCTGGACAGGATACAATGTTTCAACAACATTCTAGTATATTATCAACGGACTCCTTACTGTTACCACATCATAATTCCAGTTTAACTACAAGTGGTCTAAACACCCAACAAGTACCAGTTAGTATTTCAACATCACAAGGTGTCACAAATATCACAATACCAACATCAATGTCACATCTACAAACTGTTGACACCAGTAATCAACAAGTGAATCAACAAAATGATAATTCACATCATAACCAACAACAAAGCAATGAGCAACAGCATCAACAATTAAATAATTCTAATTCGAATCAACAGCATCAACAAAATCAACAAAGCATTGTACAAGTCCAAGTACAAGACAACTTAGTGAGTGTTATTGAAGAACAAAAAGATACAAAAGCACATTTAGCACATTTAACGCAAGAATTGAATCAACAGGAAGAGAATCAATTCAAAATCGAGAATCAACAACAAAATTTAACTGTTCAACAGTTACAACAATTAGGTGTTCATCATGTCTTAGATGAATCCGTGCTAAAATCTGATAATTCTTTAACGATCCAACAAGAAAGTGATCCATTACAGATTGTTAAAGATGAAAAAGATAATTCAGCGAAATTATTAAGTGGAGCACAATTTCAGATACCTGATTTAAAGACTACGGGACATCATATGATGGACGTGCGCACTGTTGATGGCAGTATCGTTAAAATATCAACTGGAATTCAAGAACAAGATCTTGCGAAAACACTTGGTGTTGAAATGGTGTCTAGTATGTACAAGGTAAATGTTGAAGATATCAACCAACTACTAGCGTATCATGAAGTTTTTGGTAAATTACAAAATGATATCACTCCAACCTCACCAATTGTCACGCAAAATAGTACGCATATTGTTACAAACACATCGGCCGCTGTAACCGGAAATGTAAATATTCAATCACCAAATTTAAATATTGTAAAAACAGATCAAGAAGTGACGACTACTACACTAAACCCAGCGACAGATGCATCCGGGGCTGTGGTTAGTACGGGAACACATGTATGTGATTTATGTGGAAAAATGTTTCCATTCCGCTATCAAGTTATTGTACATCGACGGTATCATGCTGAACGAAAGCCTTTTACCTGTCAAGTTTGCGGCAAAGCATTTTCATGTGCCGCAGAATTGACAGGTCATGGAAAATGTCATTTAGGTGGTAGCATGTATACGTGTGCGATATGCTTTCACGTATTTGCTAATGCTGCCTCTCTAGAACGACACATGAAAAGGCATTCCACTGATAAACCATACGCATGTACAATTTGTGGGAAATCATTTGCACGTAAAGAGCATTTAGATAATCATACACGGTGTCATACAGGTGAGACCCCATATCGATGTCAGTATTGTGCGAAAACGTTTACACGCAAAGAGCATATGGTGAATCATGTACGTAAACATACCGGCGAAACACCTCATCGTTGCGAAATCTGTAAAAAATCATTTACACGTAAAGAACATTTCATGAATCACGTAATGTGGCATACCGGAGAAACGCCACATCATTGTACACTTTGTGGTAAGAAGTACACCCGGAAAGAACATTTGGCGAATCATATGCGATCCCATACAAACGATACACCATTTCGGTGTGAGATTTGTGGAAAATCATTCACACGAAAAGAACATTTCACGAATCACATTATGTGGCATACAGGTGAAACACCGCATCGGTGTGATTTCTGTTCGAAAACATTTACACGTAAAGAGCATTTGTTGAATCATGTGCGTCAACATACCAATGAATCACCACATCGGTGTGGATACTGTTCGAAGTCGTTTACACGTAAAGAGCACTTAGTTAATCATGTGAGACAACATACTGGAGAAACACCTTTCCGATGTAGTTATTGTCCAAAGGCATTCACACGTAAAGATCATCTAGTAAATCATGTGCGTCAACACACTGGTGAATCACCGCATAAGTGTACATATTGTACGAAAAGTTTTACGCGTAAAGAACATTTGACAAACCATGTGCGCCAACATACAGGTGAATCGCCACATCGTTGTCAATATTGTTCAAAATCATTCACACGTAAAGAACATCTTACAAATCACGTTCGAATACACACCGGTGAATCGCCACATCGTTGTGAATTCTGTCAGAAGACATTCACACGTAAAGAGCATTTAACCAATCATTTACGGCAGCATACGGGAGAAACACCTCATTGTTGTAACGTGTGTTCAAAACCGTTTACGCGTAAAGAACATTTAATCAATCACATGCGTTCACACACTGGTGAACGGCCATTTGCTTGTACCGAGTGTGGTAAATCGTTCCCGCTAAAAGGAAATCTATTATTCCACCAACGATCGCATAACAAAGGTGCAAACGCTGAAAGACCATTTAGATGTGATTTATGTCCGAAAGATTTTATGTGTAAAGGTCATTTAGTGTCACATAGACGATCACATAGTGGTGAAAAACCGCATGCATGTCCCGATTGTGGTAAAACATTTGTTGAAAAAGGTAATATGTTACGTCATATGCGTAAACATAATACTGATGCCGCAAATAGCACGACAAATTCGGCGGTGACAACAATAGCAGCTGTTGCTGCCAATACTGTGGTGACAAATGTTACAACAGCTCAAGTACAACAACAACAGCAGCAAAATTCACAAACTAATCAGAACACAACTAGTTTACAAATACCACAAGTGACACAATCGCAACAAACTTTGGCGGCTCAAGTGGCCGCAGCTAATCAAGCTGGTGTTATTTCACAAACGGTACCCACTGTTGGCCATATGCAAATACATCAACAAGGTAATCGACCTGTTGTTGTACCCACACCAAATGGTAATGTTTTAGCGTCTTATTAA
- Protein Sequence
- MNSSDHNIIPTSGAPPIPITSSEDSNRGNQHQTTTTTVPTDLRVNPTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPTTTTTTKVENGKSGQDTMFQQHSSILSTDSLLLPHHNSSLTTSGLNTQQVPVSISTSQGVTNITIPTSMSHLQTVDTSNQQVNQQNDNSHHNQQQSNEQQHQQLNNSNSNQQHQQNQQSIVQVQVQDNLVSVIEEQKDTKAHLAHLTQELNQQEENQFKIENQQQNLTVQQLQQLGVHHVLDESVLKSDNSLTIQQESDPLQIVKDEKDNSAKLLSGAQFQIPDLKTTGHHMMDVRTVDGSIVKISTGIQEQDLAKTLGVEMVSSMYKVNVEDINQLLAYHEVFGKLQNDITPTSPIVTQNSTHIVTNTSAAVTGNVNIQSPNLNIVKTDQEVTTTTLNPATDASGAVVSTGTHVCDLCGKMFPFRYQVIVHRRYHAERKPFTCQVCGKAFSCAAELTGHGKCHLGGSMYTCAICFHVFANAASLERHMKRHSTDKPYACTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTLCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTNESPHRCGYCSKSFTRKEHLVNHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCQYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFACTECGKSFPLKGNLLFHQRSHNKGANAERPFRCDLCPKDFMCKGHLVSHRRSHSGEKPHACPDCGKTFVEKGNMLRHMRKHNTDAANSTTNSAVTTIAAVAANTVVTNVTTAQVQQQQQQNSQTNQNTTSLQIPQVTQSQQTLAAQVAAANQAGVISQTVPTVGHMQIHQQGNRPVVVPTPNGNVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -