Ccar022005.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:1983629-1986535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.6e-05 0.00098 19.8 2.7 1 23 73 95 73 95 0.97 2 17 0.00011 0.0024 18.6 1.2 1 23 101 123 101 123 0.97 3 17 2.9e-06 6.2e-05 23.6 3.1 1 23 129 151 129 151 0.98 4 17 0.0079 0.17 12.8 7.6 1 23 157 180 157 181 0.96 5 17 1.2e-06 2.6e-05 24.8 2.1 1 23 257 279 257 279 0.98 6 17 0.21 4.5 8.3 2.7 1 23 285 307 285 307 0.92 7 17 1.5e-05 0.00033 21.3 0.8 1 23 313 336 313 336 0.97 8 17 0.00011 0.0023 18.7 4.0 1 23 357 379 357 379 0.98 9 17 0.0068 0.15 13.0 2.5 1 23 385 407 385 407 0.97 10 17 6.6e-07 1.4e-05 25.6 3.3 1 23 413 435 413 435 0.98 11 17 0.03 0.65 10.9 7.6 1 23 476 498 476 498 0.96 12 17 5.4e-07 1.2e-05 25.9 2.7 1 23 504 526 504 526 0.98 13 17 0.00014 0.0031 18.3 0.7 1 23 535 557 535 557 0.98 14 17 5.3e-06 0.00011 22.8 0.7 1 23 563 585 563 585 0.95 15 17 9.5e-07 2.1e-05 25.1 1.0 1 23 594 616 594 616 0.97 16 17 1.7e-05 0.00037 21.2 1.4 2 23 623 644 622 644 0.96 17 17 4.5e-05 0.00098 19.8 3.4 1 23 650 672 650 672 0.98
Sequence Information
- Coding Sequence
- ATGGAATCAGTTAAACTTGAAAAAGAAGAAATATTGGACGAAAATAATTCAATAGAAAATGTGTTGATTAAACAAGAGATCGATTTAGAAAAAATATTTATTAAAGAAGAAATATCAGAGGAAAGTGAAAATTTAGAACATGAACTAATTACAGCTGAATATGAAACCGATAAATTAGAAGTGAAAAATTCTTCAAAAGCTCAACAAAACAAACTACATTCATGTGAGTTTTGTGGCAAAAAGTTTAAAGATCGAAGAAATTTAGCTGGACATCGACGAATTCATACTGGTGAAAAACCATTTTCATGTGAAGTGTGTGGCCAAAAATTTAGTTTGAAGCAGAATTTAAATGCACATAAAAGTAAACATACGGGAGAAAGAGCTTTCTCTTGTGAGGTTTGTAATAAAAAATTTACCCAACAAAGTAGTTTGAGTACTCATAAAAGAACTCACACGGGGGAAAAACGTTTTTCATGTAAAATTTGTGGTAAAAAATATAGTTTTAAGTGTAGTTTAATGACACATAAAAAAATATTTCATCACGGCGAAGATTTAAGTGATGCCGAAGTAGTCGAAGAAGTCGAAGAAAAACTTGAAGAATTTACGAAAAATGAAATTATTGACGAAGAAAATGTTCAAATTAAAGAAGAAATCAATTTGGAAGAAGTTTTGGCTCCTCAAGTTTTGATTAAAGAGGAAAAATTTGAAGAAAGCGGCACAATCGAACAATTAGAAGATTCTGCTTCCAAATCTCAACAAAACAAATCATATTCGTGTGAGTTTTGTGATAAAACATTCACACGACAAAATACTTTAACTGAACATCAACGAATTCATACCGGAGAAAAACCATTTTCTTGTGAAATTTGTCATAAACAATTTCGTTGGCGACATAGTTTAATTGGTCATAATCTAGTTCACACGGGAGAAAAACCATTCTCATGTGAGATTTGTGGGAAAAAATTTACACAACAAGGTAGTATGAATATACATAAAAAAATAAATCACACAATGGAACTGCAACTGAACGATGCAACTGATCAGTTAGAAGATTACCAAAACAAACCATTTTCATGCGAGTTTTGTGAGAAAACATTCACACGACGAAGAAATTTTCTTAATCATAAACGAATTCATACGGGTGATAAACCATTTTCGTGTAAAATTTGTGATAAACAATTTCGTTGGTCACATAGTTTAGTGAGTCATAATCGAATTCACACGGGAGAAAGACCTTATTCGTGCGAGATTTGTAATAAAACATTTACACAACAGAGTAGTTTGAAGAAACATAAAACAACTCACAATGGAGGATTTCAAACTTTTCCATGCGAAGTTATTATAGACGAAAATAACACGGAAAATGCAACCGCAACCGATCACTTAGAAGTTCGAACTGTTTCGAAACGTAAAGTAAATAGAAAACATTTTTGTAATTTTTGTCACAAGAAATTTAAATGTCCAAGTGATTTAATTGTGCATCAACGAATTCACACCGGGGAAAAACCATTTTCATGTGAAATTTGTGGTAAAAAATTTACTCAACAAAGCACGTTAAAAACCCATCAATTTACTCATACGGGAGAAGAACGGGAACCACGATTTTCATGTGAATTTTGTGGTAAAAATTTTGTACAGTTAGGTTTTTTAACTATTCATAAACGAATTCATACCGGGGAAAAACCATTTTCATGTGAAGTATGTGGTAAAAAATTTTCACAACGAAGCTCGTTAAAAATACATGCATTCATTCATACTGGACTAGAACGGGAAAAACGATTTTCATGTGAGATTTGTGGTAAAAAATTTATTCAACAAAGTAAATTAAATCGACATCAAGTGAGTCATATTGATGAAAAATCACTTTCATGTGAAATTTGTGGTAAACAATTTAAACATGAAAGTAGTTTGACTGTACATAAAATAACTCATAAGGGGGAAAAACGTTTTTCATGTGAAATTTGTGGGAAAAAAGTTAATCATAAAACTTCGTTAAAACGTCATAGAAAAATTCATTCGTTTAGTCAACAAACTGATTTAAATTTAACCGATTATTTAACGGGAGTATTTGAAAAGGAAAATGATTTGAAAAATGAAGAATTCACGAAAAATGAAGAAAATGTTCAAATAAATTTGAAACAAGTGTTGATTAAAGAGGAACCTTTTGAAGAAAACGATACAATGGAAGATGAATTAATTACAGCTGAAGATGAAATCGATCAATTAGAAGATGAAAGTGATTAA
- Protein Sequence
- MESVKLEKEEILDENNSIENVLIKQEIDLEKIFIKEEISEESENLEHELITAEYETDKLEVKNSSKAQQNKLHSCEFCGKKFKDRRNLAGHRRIHTGEKPFSCEVCGQKFSLKQNLNAHKSKHTGERAFSCEVCNKKFTQQSSLSTHKRTHTGEKRFSCKICGKKYSFKCSLMTHKKIFHHGEDLSDAEVVEEVEEKLEEFTKNEIIDEENVQIKEEINLEEVLAPQVLIKEEKFEESGTIEQLEDSASKSQQNKSYSCEFCDKTFTRQNTLTEHQRIHTGEKPFSCEICHKQFRWRHSLIGHNLVHTGEKPFSCEICGKKFTQQGSMNIHKKINHTMELQLNDATDQLEDYQNKPFSCEFCEKTFTRRRNFLNHKRIHTGDKPFSCKICDKQFRWSHSLVSHNRIHTGERPYSCEICNKTFTQQSSLKKHKTTHNGGFQTFPCEVIIDENNTENATATDHLEVRTVSKRKVNRKHFCNFCHKKFKCPSDLIVHQRIHTGEKPFSCEICGKKFTQQSTLKTHQFTHTGEEREPRFSCEFCGKNFVQLGFLTIHKRIHTGEKPFSCEVCGKKFSQRSSLKIHAFIHTGLEREKRFSCEICGKKFIQQSKLNRHQVSHIDEKSLSCEICGKQFKHESSLTVHKITHKGEKRFSCEICGKKVNHKTSLKRHRKIHSFSQQTDLNLTDYLTGVFEKENDLKNEEFTKNEENVQINLKQVLIKEEPFEENDTMEDELITAEDEIDQLEDESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -