Ccar015246.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:18966767-18968857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.9e-05 0.0021 18.8 1.8 1 23 191 213 191 213 0.95 2 17 0.28 6 7.9 4.7 1 20 219 238 219 241 0.91 3 17 0.018 0.38 11.7 2.7 1 23 247 269 247 269 0.96 4 17 1.5e-05 0.00031 21.4 0.5 1 21 275 295 275 296 0.96 5 17 2.4e-05 0.00051 20.7 1.4 1 20 303 322 303 325 0.92 6 17 9.2e-08 2e-06 28.3 1.7 1 23 331 353 331 353 0.98 7 17 0.0075 0.16 12.9 6.7 1 23 359 381 359 381 0.98 8 17 2.8e-05 0.00061 20.5 2.5 1 23 387 409 387 409 0.98 9 17 2.6e-06 5.6e-05 23.7 3.4 1 23 415 437 415 437 0.98 10 17 5.9e-07 1.3e-05 25.8 1.5 1 23 443 465 443 465 0.98 11 17 0.0036 0.078 13.8 6.7 1 23 471 493 471 493 0.98 12 17 5.3e-05 0.0011 19.6 2.7 1 23 499 521 499 521 0.98 13 17 4.9e-07 1.1e-05 26.0 1.1 1 23 527 549 527 549 0.98 14 17 1.1e-05 0.00024 21.8 1.4 1 23 562 584 562 584 0.96 15 17 0.0031 0.067 14.0 1.7 1 21 590 610 590 611 0.95 16 17 8.4e-07 1.8e-05 25.3 1.6 1 23 618 640 618 640 0.98 17 17 7.1e-05 0.0015 19.2 4.5 1 23 646 668 646 669 0.96
Sequence Information
- Coding Sequence
- ATGGCAAATTATTTGATTAATAACGAAAGAAATCTTTTGACTATCAATGAAAATAGTATTAAACTTGAAAAAGAATTGAATACAGAATTTATATTTAAAGAAGATGTTTTAGAAAATAATGGTACAATAGAAGTCGGGCAAATTAAGAATGAAATTGTACCCGAAAACATAAGCGTTACAATGAAAGAAATACTAGAAAACAGTGACGCTAGTTTAAGATATGAACCACTAAATACCGAACATATTAAAACTGTTAATAACGTAGATATTAAACTTGAAAGAGAATTGAATATAGAACTCGTAACTAAAGAAGAAGTTTTAGAAGACAATGGTACATTTGAAGACGGGCAAATTAGAAATGAAATAGTGTCAGAAGACAGAAGCGTTACAGTGAAAGAAATAATAGACAACATCGGGGATTGTTTAAAACTTGAACCTATAAATACAGAACATATTAAACTTGAAAAAGACTTGAATACAGAATTTATAATTAAAGACGAAATTTTAGATGAATATTTCTTAGAACCAAAAAAAGTTTACAAAGGAAATAAAAAATATGGAGAAAAATCATTTTTATGTCAAGTTTGTAATAAATCATTTAGTAGCAACCAGTATTTAGTTACACATAATCGAACTCACAGTGAAGAAAAACCATTTTCATGCCAAGTTTGCAAAAAATCATTTAGTTGCAATCGTAGTTTACTTAGACATAAATGGACTCACAGTGGGAAAAAATCATTTTCATGCCAAGTTTGTAATAAATCATTTAGTTGCAACCAGTATTTAATTGCACATAAACAGGCTCACAGTGAAGAAAATCCATTTTCATGCCAAGTTTGTAATAAATCATTTAGTAGCAAATACTATTTAATTGCACATACAAGAGCTAACAGTGAAGAAAAACCATTTTCATGTCAAATTTGTAATAAATCATTTAGTAGCAACAGTAATTTAGTTTCACATAAATGGACTCACAGCGGAGAAAAACCTTTTTCGTGTCAAATTTGTAATAAATCATTTTATAGCAACAGTAATTTAATTACACATATACGGACTCACAGTGAAGAGAAACCATTTTCATGCCTAGTTTGCAATAAATCATTTAGTTGCAAGCGTAGTTTATTTCGACATAAACGGACTCACAGTGGAGAGAAACCATTTTCATGCCAAGTTTGCAATAAATCATTTAGTAGCAACGATTATTTCGTTTTACATAAACGGACTCACAGTGAAGAAAACCCATTTTCGTGCCAATTTTGTAATAAATCATTTAGTAGCAAGTACTATTTAGTTACACATATACGGACTCACAGTGAAGACAATCTATTTTCTTGTCAAATTTGTAATAAATCATTTAGTAGCAACAATAATTTAGTTGCCCATAAACGAACCCACAGTGGAGAAAAACCATTTTCTTGCCAAGTTTGTAATAAATCGTTTAGTTGCAATCGTAGTTTATTTAGACATAAGAGAACTCACAGTGGAGAAAAACCATTTTCATGCCAACTTTGTAGGAAATCATTTAGTACGAACGACTATTTTGTTGCACATAAACGAACTCACAGCGAAGAAAAACCATTTCCATGCAAAGTTTGTAATAAATCATTTAGTAGCAATAATAATTTAGTTGCCCATAAACGAACTCATATTGTGCATAAACGAACTCACAGTGAAGAAAAGCCATTTTTATGCCAAGTTTGTAATAAATCATTTAGTAGCAACCAGTATTTAATTGCACATAAACGGACTCACAGTGAAGAAAATCCATTTTCATGCCAAGTTTGCAATAAATCATTTAGTTGTAAAGATAATTTAGTTATACATAAACGAATTCAGAATGGAGAAAAACCATTCTCATGTGACGTTTGTAAAAGATCATTTCGTAGCAACAGTAATTTAGTTGCACATAAACGGACTCACAGTGAAGAAAAACCGTTTTCGTGCCAATTTTGTAATAAGTCATTTCGTATCAACGGTAATTTAGTTAGACATAAACGTACTCATCATGAAAAAAATATTTCAAAATAA
- Protein Sequence
- MANYLINNERNLLTINENSIKLEKELNTEFIFKEDVLENNGTIEVGQIKNEIVPENISVTMKEILENSDASLRYEPLNTEHIKTVNNVDIKLERELNIELVTKEEVLEDNGTFEDGQIRNEIVSEDRSVTVKEIIDNIGDCLKLEPINTEHIKLEKDLNTEFIIKDEILDEYFLEPKKVYKGNKKYGEKSFLCQVCNKSFSSNQYLVTHNRTHSEEKPFSCQVCKKSFSCNRSLLRHKWTHSGKKSFSCQVCNKSFSCNQYLIAHKQAHSEENPFSCQVCNKSFSSKYYLIAHTRANSEEKPFSCQICNKSFSSNSNLVSHKWTHSGEKPFSCQICNKSFYSNSNLITHIRTHSEEKPFSCLVCNKSFSCKRSLFRHKRTHSGEKPFSCQVCNKSFSSNDYFVLHKRTHSEENPFSCQFCNKSFSSKYYLVTHIRTHSEDNLFSCQICNKSFSSNNNLVAHKRTHSGEKPFSCQVCNKSFSCNRSLFRHKRTHSGEKPFSCQLCRKSFSTNDYFVAHKRTHSEEKPFPCKVCNKSFSSNNNLVAHKRTHIVHKRTHSEEKPFLCQVCNKSFSSNQYLIAHKRTHSEENPFSCQVCNKSFSCKDNLVIHKRIQNGEKPFSCDVCKRSFRSNSNLVAHKRTHSEEKPFSCQFCNKSFRINGNLVRHKRTHHEKNISK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -