Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:70817735-70828020[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.00014 0.003 18.3 2.9 1 23 99 121 99 121 0.99

2 27 4.2e-05 0.00091 19.9 2.4 1 23 155 177 155 177 0.99

3 27 0.0002 0.0042 17.8 1.9 1 23 224 246 224 246 0.99

4 27 0.0081 0.17 12.8 3.7 1 23 287 310 287 310 0.98

5 27 2.2e-05 0.00047 20.8 0.3 1 23 317 340 317 340 0.98

6 27 0.0028 0.06 14.2 1.5 1 23 372 395 372 395 0.97

7 27 0.24 5.2 8.1 6.1 3 23 404 424 403 424 0.99

8 27 3.4e-05 0.00074 20.2 3.5 1 23 430 452 430 452 0.96

9 27 0.00015 0.0033 18.2 0.6 1 23 458 480 458 480 0.98

10 27 5.2e-05 0.0011 19.6 3.3 1 23 615 637 615 637 0.98

11 27 0.014 0.29 12.0 4.4 1 23 676 699 676 699 0.97

12 27 3.9e-05 0.00085 20.0 2.0 1 23 706 729 706 729 0.97

13 27 2.3 50 5.0 0.3 2 23 735 754 734 754 0.74

14 27 0.017 0.36 11.8 5.6 1 23 760 783 760 783 0.95

15 27 0.00069 0.015 16.1 0.2 3 23 792 812 791 812 0.99

16 27 2.5e-05 0.00053 20.7 2.3 1 23 818 840 818 840 0.98

17 27 4.5e-05 0.00098 19.8 4.0 1 23 846 868 846 868 0.97

18 27 0.00083 0.018 15.9 3.4 1 23 972 994 972 994 0.98

19 27 0.018 0.39 11.6 3.4 2 23 1027 1048 1026 1048 0.97

20 27 0.0001 0.0022 18.7 2.4 1 23 1054 1076 1054 1076 0.99

21 27 2.2e-05 0.00047 20.9 2.9 1 23 1082 1104 1082 1104 0.96

22 27 0.081 1.7 9.6 2.5 1 23 1238 1260 1238 1260 0.98

23 27 0.69 15 6.7 3.1 2 23 1262 1284 1261 1284 0.96

24 27 0.018 0.39 11.6 3.4 2 23 1293 1314 1292 1314 0.97

25 27 3.5e-05 0.00075 20.2 1.7 1 23 1320 1342 1320 1342 0.99

26 27 0.068 1.5 9.8 3.7 3 23 1350 1370 1348 1370 0.91

27 27 0.00014 0.003 18.3 4.9 1 23 1376 1398 1376 1398 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.00014	0.003	18.3	2.9	1	23	99	121	99	121	0.99
2	27	4.2e-05	0.00091	19.9	2.4	1	23	155	177	155	177	0.99
3	27	0.0002	0.0042	17.8	1.9	1	23	224	246	224	246	0.99
4	27	0.0081	0.17	12.8	3.7	1	23	287	310	287	310	0.98
5	27	2.2e-05	0.00047	20.8	0.3	1	23	317	340	317	340	0.98
6	27	0.0028	0.06	14.2	1.5	1	23	372	395	372	395	0.97
7	27	0.24	5.2	8.1	6.1	3	23	404	424	403	424	0.99
8	27	3.4e-05	0.00074	20.2	3.5	1	23	430	452	430	452	0.96
9	27	0.00015	0.0033	18.2	0.6	1	23	458	480	458	480	0.98
10	27	5.2e-05	0.0011	19.6	3.3	1	23	615	637	615	637	0.98
11	27	0.014	0.29	12.0	4.4	1	23	676	699	676	699	0.97
12	27	3.9e-05	0.00085	20.0	2.0	1	23	706	729	706	729	0.97
13	27	2.3	50	5.0	0.3	2	23	735	754	734	754	0.74
14	27	0.017	0.36	11.8	5.6	1	23	760	783	760	783	0.95
15	27	0.00069	0.015	16.1	0.2	3	23	792	812	791	812	0.99
16	27	2.5e-05	0.00053	20.7	2.3	1	23	818	840	818	840	0.98
17	27	4.5e-05	0.00098	19.8	4.0	1	23	846	868	846	868	0.97
18	27	0.00083	0.018	15.9	3.4	1	23	972	994	972	994	0.98
19	27	0.018	0.39	11.6	3.4	2	23	1027	1048	1026	1048	0.97
20	27	0.0001	0.0022	18.7	2.4	1	23	1054	1076	1054	1076	0.99
21	27	2.2e-05	0.00047	20.9	2.9	1	23	1082	1104	1082	1104	0.96
22	27	0.081	1.7	9.6	2.5	1	23	1238	1260	1238	1260	0.98
23	27	0.69	15	6.7	3.1	2	23	1262	1284	1261	1284	0.96
24	27	0.018	0.39	11.6	3.4	2	23	1293	1314	1292	1314	0.97
25	27	3.5e-05	0.00075	20.2	1.7	1	23	1320	1342	1320	1342	0.99
26	27	0.068	1.5	9.8	3.7	3	23	1350	1370	1348	1370	0.91
27	27	0.00014	0.003	18.3	4.9	1	23	1376	1398	1376	1398	0.98

Sequence Information

Coding Sequence: ATGCCAAAATTAATTTGCCAAGAATGTATAACCCAAATCACTAATACATGTTATTTTCGTGAAACATGCGAAAAAAATACTTCCATATTGTTAAAATTAGTAACAAATTCCACGTTAGAGAACGATGTTAGGAATCAAACACCTGCAGAGGAACCTGCGATAGAGAATATTATTAAAAATCAAACACCCGCAGAAGAATTTACGATAAAGAATGACATTAAGAATGAAGGACGTAGGGAAGAAGAATCCATAGATACATTTGGTAATTATACTGACCTAAGAGATGCGCCTATCTATAAATGTGAATACTGTTCCCGAACATATGTCGAAAAAAAATATTTAAATCGACATGTTAAAACACACGGTCGTGGCTACAATTGTTCATGTAAAAATGTCCCACCTATAGAAATATGGGAAGATTACCTTGATGATAATGAGATGAGTAATAAACGTAGAGTTATTTACCAATGTCCAAAATGCGATAAAACCTACAGTGAGAAAAAATATGTAAATCGACATTTAAAATCACATAAATGTTTTTGCGACGCACCTAGTAACTTTATGGTAACTGTACTTGACGAAACAAAATGTTCGTGTAAGTCTGTTCCTGCTATAGAAATATGGGATGACTATTTTGATGGTGATGAAGATGATAAACGTAAAGTAATTTATCAGTGTCCAAGGTGTGATAAGTCCTATAGTGAGAGAAGATATGTCAATCGTCATTTAAAATCTCATAAATGCGTTTGTAATGAAAGTGGTAACTATACGGTAATCGAGATTGATAAAACAAAATTAATAGAGGACAAAAACAGTATTTTGGATCCCGAAATAATAATTCAAAATGATACAAAAGTGTTTCAATGTCCGATTTGTAAACGGATTTACAAAGAGCGTAAATTTTATAATCGTCATTTTCGAACCACTCATTCGAATATATTAACTCAATACCCTTGTACTCAATGTGATCAGGTGTTTAAATTAGCTTCATCGTTGAAACGGCATGTACAAACTATTCATGAAAAGTTCAAACAGGTCTGCACAATCTGTGGAAAATTAGTCATACACTTACGTTTACATATACGAGAAACACACAGCGATTCCGAACGGCCGTATAAATGTTCACTTTGTAATAGTCGTTTTACGGTACCCAGTAAAATGCGCCAACATATACGTGAAAAACATATGGGCTTACGTTCTTATAAATTATGTTCCGTCTGTGGGAAAAAATGCCACTCGTTTTGTGCTCTTGAAATACATATGAGATCACATACGGGGGAGAAACCATTTGATTGTTCAGATTGTGGGAAAAAATTTCGAAATAAGCAACATTTACGTGATCATAAGTTAATCCACACAGGTCAACGACCTTATATATGTACGTTTTGTAAAAAAGGTTTTAAAACGGCTTATGCATTGAAGGGGCATGTTCGAATCCACACAGGTGAATGTCCATATGAATGTTCCGTGGAGGACGATGTTGATGAAATGCCAAAATTAATTTGCGAAGAATGTAAAACACAAATAACAAATGTATGTAATTTTCGTGATACATGTGAAAATAATACCGAATTGTTATTAAAAATACTCACAGAATCAACAAAAGTTGAAACGTTCAGTGAAACATCTGAAGATTTTCATAATGATATTGATGATTTGAAGATAAACGATGATTCAAATTCATCAAATCATAATAACGAAACAAGTCTAGAACCAAAATCTGAAAATACTTACAAATGTGAATATTGTTCTGAAACATGTGCTATAGGGGAAATTTGTGGATGTAAAAAGAAAGAAAGGAAAAAAGAAATAAGAAGAGGGAAAAAGAAAATTTGTAAGAATTTTCAATGTCCAAAATGTGAAAAAGCATACAGCGATAAATATTATTTGCATAAGCATTTAAAAGAGCATAGAAAAACTGATGATGATCCAATTTTAGATGAATTTATTAAAGCAACAGCATCACAAAAAATCAAATCGGAAATATTAAGTCCAGAAATTATAATCAAAGACAATGTAACATTATTTCAATGTCCCACATGTAAAAGAGTTTACAAACATCGAAAATTCTATAATTCGCATGCACGAATTAATCATACAAGCACAGCACGTCTCTATCCGTGTACAAGATGTGATCGAGTATTCAAGTTATCTTCGTCACTCAGACGTCATCAAAAGAATACGCACGACAATCAAAAACAAGTTTGTACTGAGTGTGGGAAATCAGTAATTCACTTAAGTGTTCATATTCGAGAAGTTCATGATCAAATACGACCGCATCATTGTACATATTGTAATCGACGTTTCACAAAACCAAGTATTTTACGACAGCATATACGTGAAAAACATATGGGACAAAAATCGTATAAATTATGCTCAGTATGTGGAAAAACAGTACAAACGGCGCAAGCATTACAAGATCATATGCGTTCACATACCGGAGAAAAACCATTTGAATGCTCGGAATGTGGGAAAAAATTCCGTAGTCAAAAATATTTACATGGGCATATGCTAATACATACTGGTATACGTGCGCATATTTGCTCATATTGTAAAAAAGGTTTTAAAACTAGCACAACATTGAAGCGACATGTTCGTATACATACTGGAGAATGTCCATATGTCTTTGAAGATGATCAGTATCCTCAAAACATATGTCTCGAATGTTCATATGAAATCGAAAATATTTGTGCATTTCAACAAAAATGCATAGCGAATTGCAATAAACTCGAAACCGTATTAAATGAATACAATGAACATAATTCAAAATTAATTGTATCATTAAAAATAGAAAAAGATGAAATTATCATCAAAGATGAATTTGCTTCCGATCATATTGAGTCTGATAATGATACATCATCAACCACATCTAGCGAAGAGAAGCAAAAATCAATCAATAACAAAAACAACAAATATTTCTGTACCAAATGCAACAAAACATTCCGACTTGAACGCAATTATATTAAACATTTACAAATGCATAAAAGATGCATCGAATGTTGTAAATATTTTCAGTCACAAACTGTATTAGAACAACATAAACGTGAAAAACATAATGGTGAAAAATTATTTGTAAAAGTGTGTACGATATGTGGAAAACAATGTTATTCCACTACATCATTTTTATATCATATGAGATCACATAACGATGAAAATCCGTATAAATGTAATATTTGCAATAAGGAATTTAAGATTATTAGCCATTTAAATGCACATCGACAATCTCATGGTGGTTTTAAAGCACATATTTGTAGAAATTGTAATAAATCGTTTACGACCAGTTATTCTTTAAAAATTCACATGTTAATACATACAGGTGAACGTCCGTTTTGTTGTCATATATCCGAAGAGGATCCATACCCTCAAAATATATGTATGGATTGTATTAATGAAATTGAACGCTTTGAGAAATTTCGACAACAATGCATAAAGAATTTTCACCAACTTGAAAATATATTAAAAGAAAAACTATGTAACAATTCCCTAGAAAACAGTATTTATATAAAAGAGGAATTTCTAGAGACATCTATTTCACAAACAAATTTATCAATTACTTCCGAAATAAGTAATGGCGATTGGAGGGTTTCTCCAATAGTAGAAAAAGAAAAATTATCAAAGTCAGATGATATATACACATGTAAAACCAATAATGATGATTGGAGGACTTCCTCAGAATTAGAAAATGAAAATTTATCCAAATCAGATGATATTTATACGTGTAAAAATTGTGATAAAATATTCCTGCTTGAACGAAATTATAAAACACATTTACAAAAACATAAAAAATGTCCAGAATGTTGTAAATATTTTCCATCGCAAAATGTTTTAGAACGGCATAAACGTGAAAAACATAATGGTGAAAAATTATTTATAAAAGTGTGTACGATTTGTGGAAAACAATGTTATTCCACTACATCATTTTTGTATCATATGAGATCACATAACGATGAAAATCCATATAAATGTGAAATTTGTAATAAAGTATTTAAGATAATAAGTCATTTGAATGCTCATCGACAATCTCACAGCGGTGTAAAATCACATTTATGCGAACATTGTAATAAATCATTTTTGACTAGTTACGCGTTAAAGAAACATAGTGTTATACATACAGGTGAAAGGCGATTTAGTTGTCAACTATGTAATAAAAAGTTTACACAAAAAACTCATATGATTACACATATGAAAGTACACAAAATTGCTTTGTAA
Protein Sequence: MPKLICQECITQITNTCYFRETCEKNTSILLKLVTNSTLENDVRNQTPAEEPAIENIIKNQTPAEEFTIKNDIKNEGRREEESIDTFGNYTDLRDAPIYKCEYCSRTYVEKKYLNRHVKTHGRGYNCSCKNVPPIEIWEDYLDDNEMSNKRRVIYQCPKCDKTYSEKKYVNRHLKSHKCFCDAPSNFMVTVLDETKCSCKSVPAIEIWDDYFDGDEDDKRKVIYQCPRCDKSYSERRYVNRHLKSHKCVCNESGNYTVIEIDKTKLIEDKNSILDPEIIIQNDTKVFQCPICKRIYKERKFYNRHFRTTHSNILTQYPCTQCDQVFKLASSLKRHVQTIHEKFKQVCTICGKLVIHLRLHIRETHSDSERPYKCSLCNSRFTVPSKMRQHIREKHMGLRSYKLCSVCGKKCHSFCALEIHMRSHTGEKPFDCSDCGKKFRNKQHLRDHKLIHTGQRPYICTFCKKGFKTAYALKGHVRIHTGECPYECSVEDDVDEMPKLICEECKTQITNVCNFRDTCENNTELLLKILTESTKVETFSETSEDFHNDIDDLKINDDSNSSNHNNETSLEPKSENTYKCEYCSETCAIGEICGCKKKERKKEIRRGKKKICKNFQCPKCEKAYSDKYYLHKHLKEHRKTDDDPILDEFIKATASQKIKSEILSPEIIIKDNVTLFQCPTCKRVYKHRKFYNSHARINHTSTARLYPCTRCDRVFKLSSSLRRHQKNTHDNQKQVCTECGKSVIHLSVHIREVHDQIRPHHCTYCNRRFTKPSILRQHIREKHMGQKSYKLCSVCGKTVQTAQALQDHMRSHTGEKPFECSECGKKFRSQKYLHGHMLIHTGIRAHICSYCKKGFKTSTTLKRHVRIHTGECPYVFEDDQYPQNICLECSYEIENICAFQQKCIANCNKLETVLNEYNEHNSKLIVSLKIEKDEIIIKDEFASDHIESDNDTSSTTSSEEKQKSINNKNNKYFCTKCNKTFRLERNYIKHLQMHKRCIECCKYFQSQTVLEQHKREKHNGEKLFVKVCTICGKQCYSTTSFLYHMRSHNDENPYKCNICNKEFKIISHLNAHRQSHGGFKAHICRNCNKSFTTSYSLKIHMLIHTGERPFCCHISEEDPYPQNICMDCINEIERFEKFRQQCIKNFHQLENILKEKLCNNSLENSIYIKEEFLETSISQTNLSITSEISNGDWRVSPIVEKEKLSKSDDIYTCKTNNDDWRTSSELENENLSKSDDIYTCKNCDKIFLLERNYKTHLQKHKKCPECCKYFPSQNVLERHKREKHNGEKLFIKVCTICGKQCYSTTSFLYHMRSHNDENPYKCEICNKVFKIISHLNAHRQSHSGVKSHLCEHCNKSFLTSYALKKHSVIHTGERRFSCQLCNKKFTQKTHMITHMKVHKIAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -