Ccar008517.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997757.1:53459240-53463159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0034 0.074 13.9 5.8 1 23 27 50 27 50 0.97 2 23 0.012 0.25 12.2 0.8 1 23 54 77 54 77 0.97 3 23 0.0011 0.025 15.4 0.4 1 23 91 114 91 114 0.96 4 23 0.0035 0.075 13.9 2.6 2 23 121 143 120 144 0.96 5 23 8.4e-05 0.0018 19.0 0.3 1 23 148 171 148 171 0.97 6 23 0.00025 0.0055 17.5 1.8 1 23 180 202 180 202 0.98 7 23 0.00097 0.021 15.6 0.1 3 23 209 229 207 229 0.95 8 23 3e-05 0.00066 20.4 1.9 1 23 235 257 235 257 0.94 9 23 0.0052 0.11 13.3 0.7 1 15 263 277 263 280 0.89 10 23 6.6 1.4e+02 3.6 11.0 1 23 335 357 335 357 0.97 11 23 0.0069 0.15 13.0 4.8 1 23 363 386 363 386 0.95 12 23 0.00023 0.0049 17.6 0.1 2 23 391 413 390 413 0.94 13 23 0.0082 0.18 12.7 1.6 1 23 419 442 419 442 0.96 14 23 0.0013 0.029 15.2 2.2 1 23 447 470 447 470 0.98 15 23 0.00087 0.019 15.8 1.3 1 22 481 502 481 505 0.91 16 23 4.3e-05 0.00092 19.9 1.6 1 23 506 529 506 529 0.96 17 23 0.31 6.7 7.8 3.6 1 23 535 558 535 558 0.97 18 23 0.00057 0.012 16.4 1.6 1 23 563 586 563 586 0.97 19 23 0.0053 0.11 13.3 0.6 1 23 595 617 595 617 0.98 20 23 0.0026 0.056 14.3 0.0 2 23 623 644 622 644 0.95 21 23 8.7e-06 0.00019 22.1 1.5 3 23 652 672 650 672 0.98 22 23 6.9e-06 0.00015 22.4 1.7 1 23 678 700 678 700 0.96 23 23 0.00032 0.007 17.2 2.6 1 23 706 729 706 729 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCGTATGTAAAATATACAACAGATCGAGGTTTACAAAGACATATGGAAAGTGTACATTTAAAAATTGTAAAACATAAATGTAATTCATGTGAGAAAGGATATTATAGAGCCCATCATTTAAAAAACCATATTCAGAGTGCTCATGGATTGAAATTTGAATGTGATATATGCCATAACGAACTAAGTACAAAAATTAATCTGGAAGAACATAAACAAAGAGTTCATAGCGATTTGTTTGATAAGAAATATATATGTGATGAAGAATTCATCTGTGAATATTGTAATAAGAAAATAAAAACCGAAAGCGGTTTAAAATTACATATAGATCGTATACATTTAAACACAAAAAATAATAAATGTCATTTATGCGGAACTGCATTTTTTTTAAAATATGAACTAAAAGAGCATATAATACGTGATCATCATGGAACCAAGTTTGAATGTGATATATGTGACAAAGAATATAGTTCATCAGTTCTTTTAGCATCACATAAACGTTCTCGACATGATCCTAATTATGTCCGTAAAAAGTTTTCGTGTGATATATGCCACGTAGAGTATACAGCAAAATCTGCGCTAAAAAATCATCAAAGAAAACATACTGGTTCTTATATAATTTGTGAAGTTTGCGGAAAAGGTTTCACAAGTACGCATGGTTTGAATATGCATGCTTTGATTCATACAAATGTGAAAGAACACGTATGCAAAACTTGTGGAAAAGAATTTCGAAAAAAATCAAATTTAATGACACATGAAGTTGTACACACTGGGGAGAAATCGTTTAAATGTCATTGGTGTGATAAAAGTTTTACTCAGCGGACTACAGTAAACATAAATTGGGAAATAAATGCCGTTGTAAAAGTCAAAGAAGAAGTTAACGATAGTACTGATAGTGATAAAAATAATGAACCATCTGTGATGTCATATAAGTTTAAACATTGTGATTGTAAGATTGATGACGAATTTGAAACTTACACCGCAAACGATACAACAATGTTTAAATGTAAATTATGTACAAAAGAATTTACAAATAAAGAATCTTGTCATTCACACTATCATCGACATATTTTCACAAAAAAATTTTCTTGTGATTTATGTGATAAATTTTATACACATCATTACCAGTTAATTGAGCATAAAAAATTAGAACATCTTAATGAAATCGTTTGTGGAATATGCAATGAAAAATATACAACTGAAAGTGGTTTACAAAAGCACATGGAGCTTATACATTTAAAAATTAAAAAACATAAATGCAATTCATGTGAGAAAGCATATTATCGATATAGAGATCTGGTAAACCACGTTCAGAGTGCTCATGAAAGTTTAAAATACGAATGTGATATATGTCATACCGAATTAAGCACACAACGGTATCTGGAACAACATAAACGTAGATTACATCCCGATTTGATTGATAAAAAAGATGAATCTTTTGTATGCACTGTATGCAAGGAAAATTTTACAAATAAGATAGAATTGTCAAAGCACAAAAGATTACTTAAACATTTCATTTGTGAATATTGTAATAAGAAATTCCCTAAAGAAACGAATTTAAAAAATCATACAAATCGTGTACATCTACATGCGAAAAAATATAAATGTAAATTTTGCGAAAGTCAATTTCATTTTAACTATGAACTACAAATTCATGTTAGTCGTGATCATTATGGCTCCAAGTACATCTGTGATATTTGTAACAAAGAGTATCATACACCACGACTTCTAGCAAAACATAAACGTTCTCAACATGATCCTAATTTTGTGAAAAAGAAATATTCGTGTGAATTATGTAATGCTGAGTTTGTATCAAATTTTCGATTAAAAATTCATCAAAAAGAGCATGCTGGTTCATATATAGTATGTGAAGTTTGTGGAAAAGGTTTCTTATATGCGTCCAGTTTAAATAGACATGCTTTGATTCATACAAATGTTAAGGAATACGGATGTAAAACTTGTGGAAAAGAATTTAGTAAAAGATATCTTTTAAAGAATCATCAGCGCGTGCATACTGGAGAAAAACCATATCTATGTCACTTGTGTGATAAAAGATTTTCTCAGCAGTCTGCTTTGGTGATCCATTTACGATATCACACTGGTGAACGGCCGTATAGGTGTAATTTATGTTATGAAACATTTGTGTCAAAATCATTGTTGAATACCCATAAACAAAAATATCATGATATTTTCCTCGAAACTAAATAG
- Protein Sequence
- MAAYVKYTTDRGLQRHMESVHLKIVKHKCNSCEKGYYRAHHLKNHIQSAHGLKFECDICHNELSTKINLEEHKQRVHSDLFDKKYICDEEFICEYCNKKIKTESGLKLHIDRIHLNTKNNKCHLCGTAFFLKYELKEHIIRDHHGTKFECDICDKEYSSSVLLASHKRSRHDPNYVRKKFSCDICHVEYTAKSALKNHQRKHTGSYIICEVCGKGFTSTHGLNMHALIHTNVKEHVCKTCGKEFRKKSNLMTHEVVHTGEKSFKCHWCDKSFTQRTTVNINWEINAVVKVKEEVNDSTDSDKNNEPSVMSYKFKHCDCKIDDEFETYTANDTTMFKCKLCTKEFTNKESCHSHYHRHIFTKKFSCDLCDKFYTHHYQLIEHKKLEHLNEIVCGICNEKYTTESGLQKHMELIHLKIKKHKCNSCEKAYYRYRDLVNHVQSAHESLKYECDICHTELSTQRYLEQHKRRLHPDLIDKKDESFVCTVCKENFTNKIELSKHKRLLKHFICEYCNKKFPKETNLKNHTNRVHLHAKKYKCKFCESQFHFNYELQIHVSRDHYGSKYICDICNKEYHTPRLLAKHKRSQHDPNFVKKKYSCELCNAEFVSNFRLKIHQKEHAGSYIVCEVCGKGFLYASSLNRHALIHTNVKEYGCKTCGKEFSKRYLLKNHQRVHTGEKPYLCHLCDKRFSQQSALVIHLRYHTGERPYRCNLCYETFVSKSLLNTHKQKYHDIFLETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -