Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:19828504-19832679[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.92 20 6.3 0.8 2 23 145 163 144 163 0.89

2 20 0.00019 0.0042 17.8 2.0 1 23 169 191 169 191 0.99

3 20 0.00045 0.0098 16.7 3.1 1 23 197 219 197 219 0.98

4 20 6.1e-05 0.0013 19.4 2.8 3 23 237 257 235 257 0.96

5 20 1.6e-06 3.4e-05 24.4 1.5 1 23 263 285 263 285 0.99

6 20 0.00036 0.0078 17.0 1.3 1 23 291 313 291 313 0.95

7 20 0.00073 0.016 16.0 1.2 1 23 319 342 319 342 0.96

8 20 0.00039 0.0085 16.9 2.4 1 23 357 379 357 379 0.98

9 20 0.00021 0.0046 17.7 2.2 1 23 385 407 385 407 0.98

10 20 0.0018 0.04 14.8 7.8 1 23 413 435 413 435 0.99

11 20 0.00027 0.0059 17.4 3.3 1 23 441 463 441 463 0.98

12 20 3.5e-05 0.00075 20.2 1.7 1 23 469 491 469 491 0.98

13 20 0.00062 0.013 16.3 5.4 1 23 644 666 644 666 0.98

14 20 1.1e-06 2.4e-05 24.9 1.2 1 23 672 694 672 694 0.97

15 20 0.0031 0.067 14.0 1.5 1 23 706 728 706 728 0.95

16 20 0.011 0.25 12.3 0.7 1 23 734 756 734 756 0.97

17 20 1.4e-06 3.1e-05 24.6 1.3 1 23 762 784 762 784 0.98

18 20 0.00028 0.006 17.4 3.0 1 23 790 812 790 812 0.98

19 20 4.6e-06 0.0001 23.0 1.7 1 23 827 849 827 849 0.98

20 20 2.6e-05 0.00056 20.6 1.9 1 23 855 877 855 877 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.92	20	6.3	0.8	2	23	145	163	144	163	0.89
2	20	0.00019	0.0042	17.8	2.0	1	23	169	191	169	191	0.99
3	20	0.00045	0.0098	16.7	3.1	1	23	197	219	197	219	0.98
4	20	6.1e-05	0.0013	19.4	2.8	3	23	237	257	235	257	0.96
5	20	1.6e-06	3.4e-05	24.4	1.5	1	23	263	285	263	285	0.99
6	20	0.00036	0.0078	17.0	1.3	1	23	291	313	291	313	0.95
7	20	0.00073	0.016	16.0	1.2	1	23	319	342	319	342	0.96
8	20	0.00039	0.0085	16.9	2.4	1	23	357	379	357	379	0.98
9	20	0.00021	0.0046	17.7	2.2	1	23	385	407	385	407	0.98
10	20	0.0018	0.04	14.8	7.8	1	23	413	435	413	435	0.99
11	20	0.00027	0.0059	17.4	3.3	1	23	441	463	441	463	0.98
12	20	3.5e-05	0.00075	20.2	1.7	1	23	469	491	469	491	0.98
13	20	0.00062	0.013	16.3	5.4	1	23	644	666	644	666	0.98
14	20	1.1e-06	2.4e-05	24.9	1.2	1	23	672	694	672	694	0.97
15	20	0.0031	0.067	14.0	1.5	1	23	706	728	706	728	0.95
16	20	0.011	0.25	12.3	0.7	1	23	734	756	734	756	0.97
17	20	1.4e-06	3.1e-05	24.6	1.3	1	23	762	784	762	784	0.98
18	20	0.00028	0.006	17.4	3.0	1	23	790	812	790	812	0.98
19	20	4.6e-06	0.0001	23.0	1.7	1	23	827	849	827	849	0.98
20	20	2.6e-05	0.00056	20.6	1.9	1	23	855	877	855	877	0.98

Sequence Information

Coding Sequence: ATGTTAAATTTTGAAAAAATTTGTAGAACATGTTCATCAGAAGGTGAATTACAATCTCTATTCAACGAAGATACTATAAAAATAGCAGATATGTTAACTGAAATCGTTGAAATTAAGGTAAACGAAAATGATAATTATCCACAAAAGATATGTACAATTTGTTTGGAGCAATTAGTTTCCGCCTATAATTTTAAACAACAATGTCATGATGCTCATCAAAAATTTATAGAATATTACAATGTTAGCGTTAAAAATGAAATTACCATTGAAGAAAATGATATTAAAACAGAAGATGCCCATTATTTTATTTTAGAAGATAATTTTGATGAGAATTCAGAAAGTAAATACAGCTACGACGAAACTAAATTAACGACAGAAGAAGAATCAGAAATTAAACTTGAAGAAGAGAAAACAACTAAAAGAAAAACGAAAGTATGCGAAATCTGCAATAAAAGTGTGACCAAATTATATGAACATATGCGAACACATACCAATGAAAAACCATACAAATGTGAAACATGTCAACGAGAATTTTCAGTAAGTTCCACTTATAAGCTACATTTAAACACGCATACGGGGGAAAAACCTCATGTTTGTGAAATTTGTGAACGTAGATTTATGCGTCGATACCGTTTAATGCAACATCTACGCACACATGATCCACAATTTAACACAAAAGAAAAAGTTGCTAAAAAAAGATCACATTTATGTAATTATTGTGGAAAAGGCTTTACGACACGACAAAAATTAAAATATCATATAAATATACACACCAACGAGAGACCCTATAAATGTAAACTTTGTGAAAAGTCATTTAATCAATGGACCTCGTTAAGCGCCCATCAAAATACGCATACGGGGTTAAAACGTTTTAAATGCACGTATTGTGACAGACAATTTGCATTAAAATCAACCCTAAAAACTCATGAAGTCATTCATACGGGGGCTCAACCGTTTGAATGTAATATTTGTAATCAAAAATTTCGAATAAAAAACAATTTAATCCAACATAGTTTAACAACTCACGATGTGGCAATGAGGTCAGATGATATTCATGGTGAAAAACCATATAAATGTGATCTTTGTGAGAAATTTTTTATAAGTAAATTTACACTGAATCAACATCAATTCGTTCATACGGGGGAAAGACCCTATAAATGTGAACATTGTGAGAAAACCTTTGCACAAAGAGGTACACTGGATCAACATAAATCAGTTCACACAGGTGAAAAACCATTTCAATGTGAGACTTGTCATCAATGTTTTCGATTAGCTTTGCATTTAAAAAATCATATTCGTACTCATACGGGGGAAAAACCCTACAAATGTGATTTTTGTGAGAAAAAATTTGCATTGAAACATAATTTAACGATACATAGACGTGCTCATACGGGGGAAACACCGTTTGTGTGTTCGGTTTGTAATAAAGGATTTTATGATTCAAGTAGTATGAAAAAACATGAGAGAAAACATTTATTAACGGAAAAAAGAACCTGTTCATCTGAGGGGGAATTACAACCCCTATTCAGTGAAAACTCTGTAAAAATAGCAGATATATTAACAGAAATCGTCGATATAAAGGTAATTGAAAATGATAATTATCCACAGAAAATATGTGGAAACTGTTTGGATACATTAAATTCCGCTTACAATTTTAAAAAACAATGCCATGAAGTTAATAAAAAATTCACAGATATTTTAAATAATGTTAAAAGTGAAATTGAAACGATCAAAGAGGAAAATTGTCTGAATGATGAAGAAGATAACGATGATAATTATCAATCTTCAAATGATTTCGATGATGAACAACCAGAAGAAAATAAAATAAAAATAAAATGGCATAATAGACGGAAACGTACTTGTAATATATGCAACAAAACTGTATTAAGATTGAAAGATCATTTGCGTTCACATACCAAAGAAAAACCATTTAAATGTGGAACATGCCAACAAGAATTTTCCACAAGTTCAAATTATTGTCGACATAAAAAAATACACACCGGCGAAAGACCTCACGTTTGTAATATTTGTGGACGTAGTTTTATAACAACATCGAATTTAAAGGAGCACTTAAAAATTCATGATAAATCCACGGGTGTAAACAAAGAGAAAACATATTTATGTAATTATTGTGGGAGAGCGTTTGGTCATAGAACAGCGATGTTTAATCATGTAAAACTACACACGGGAGAACGACCATATAAATGTGATCTTTGTGAAAAATCATTTTTGCAACTCGCCTTACTAACCCAACATAAATTAAATCACACCGGAGAAAAACCACATAAGTGTAATGTTTGTGAGAAATCATTTCCTGCAAAAGGGAATTTAATACGACATATGCGAAGTCATACGGGAGAAACTCCATTTGTTTGTTCACTTTGTAATAAAGGATATCGTAATTCGTGTGACTTGAAAAAACATTTAATAAGACACAAAAATAATAAAATACGTACGAAACCACCCGCGGAAAAAGTGTACAAATGTACGTTATGTGATAAAGCGTTTGCTTTTAAATCCAGTTTAACGTCGCATATGTTTATGCATTCGGGCGAGACACCTTATGTGTGTTTGGTTTGTGATAAAGGTTTTTATGATTCGAGTAACTTTTCTAAGCATAAGAGAAAACATTTATTAGCGGAAGATCGAATTAAAGAAGACAAATTATTAGAAAATATCCAAAAATAA
Protein Sequence: MLNFEKICRTCSSEGELQSLFNEDTIKIADMLTEIVEIKVNENDNYPQKICTICLEQLVSAYNFKQQCHDAHQKFIEYYNVSVKNEITIEENDIKTEDAHYFILEDNFDENSESKYSYDETKLTTEEESEIKLEEEKTTKRKTKVCEICNKSVTKLYEHMRTHTNEKPYKCETCQREFSVSSTYKLHLNTHTGEKPHVCEICERRFMRRYRLMQHLRTHDPQFNTKEKVAKKRSHLCNYCGKGFTTRQKLKYHINIHTNERPYKCKLCEKSFNQWTSLSAHQNTHTGLKRFKCTYCDRQFALKSTLKTHEVIHTGAQPFECNICNQKFRIKNNLIQHSLTTHDVAMRSDDIHGEKPYKCDLCEKFFISKFTLNQHQFVHTGERPYKCEHCEKTFAQRGTLDQHKSVHTGEKPFQCETCHQCFRLALHLKNHIRTHTGEKPYKCDFCEKKFALKHNLTIHRRAHTGETPFVCSVCNKGFYDSSSMKKHERKHLLTEKRTCSSEGELQPLFSENSVKIADILTEIVDIKVIENDNYPQKICGNCLDTLNSAYNFKKQCHEVNKKFTDILNNVKSEIETIKEENCLNDEEDNDDNYQSSNDFDDEQPEENKIKIKWHNRRKRTCNICNKTVLRLKDHLRSHTKEKPFKCGTCQQEFSTSSNYCRHKKIHTGERPHVCNICGRSFITTSNLKEHLKIHDKSTGVNKEKTYLCNYCGRAFGHRTAMFNHVKLHTGERPYKCDLCEKSFLQLALLTQHKLNHTGEKPHKCNVCEKSFPAKGNLIRHMRSHTGETPFVCSLCNKGYRNSCDLKKHLIRHKNNKIRTKPPAEKVYKCTLCDKAFAFKSSLTSHMFMHSGETPYVCLVCDKGFYDSSNFSKHKRKHLLAEDRIKEDKLLENIQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -