Ccar011454.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:28197395-28199553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00015 0.0033 18.2 2.2 1 23 46 68 46 68 0.98 2 17 3.8e-05 0.00082 20.1 1.0 1 23 74 96 74 96 0.95 3 17 2.1e-05 0.00046 20.9 4.1 1 23 102 124 102 124 0.99 4 17 1.1e-06 2.4e-05 24.9 0.4 1 23 130 153 130 153 0.98 5 17 0.00042 0.009 16.8 2.1 1 23 159 181 159 181 0.97 6 17 1.2e-05 0.00025 21.7 4.2 1 23 343 366 343 366 0.97 7 17 2.1e-05 0.00046 20.9 0.1 1 23 372 394 372 394 0.97 8 17 3.9e-06 8.5e-05 23.2 2.3 1 23 400 422 400 422 0.98 9 17 0.033 0.72 10.8 5.3 1 23 428 450 428 450 0.98 10 17 7.7e-05 0.0017 19.1 1.7 1 23 456 478 456 478 0.96 11 17 4e-05 0.00087 20.0 0.6 1 23 484 506 484 506 0.94 12 17 3.2e-05 0.00069 20.3 0.9 3 23 514 534 512 534 0.96 13 17 7.7e-06 0.00017 22.3 4.4 1 23 540 562 540 562 0.98 14 17 5.4e-05 0.0012 19.6 1.6 1 23 568 590 568 590 0.97 15 17 3e-05 0.00065 20.4 0.4 1 23 596 619 596 619 0.97 16 17 0.00026 0.0055 17.5 1.5 1 23 625 648 625 648 0.97 17 17 0.0015 0.031 15.1 1.5 1 23 656 678 656 678 0.98
Sequence Information
- Coding Sequence
- ATGTCATCGTATTCATTTCATGATATCAATAATCTATTAATCAAATACGAAGAAAAATTAAAAACTGACCATCAAATAAATCCAGAATATGCCATTAAGAAAGAAATACAAGAAGAAAAACCAAAAGAAAAACCTTTTTCATGTGATGTTTGTGATAGAACATTTAATCAATTTGTACATTTAGTTTCTCATAAACGAATTCATACTGGTGAAAAGAGTTTTTTATGTGATTTTTGTGGCAAAGCATTTCGTTATAAAAACAATTTAGTTGATCATAAACGAATTCATAGTGGTGAAAAACCATATGAATGTGACGTGTGTAAAAAATCATTTACAACACATAACGATTTAGTTAAACATAAACGAAAACATACGGGAGAAAAACCATATACATGTGATGTTTGTGCGAAATCATTTACACAAAAAGGGAATTTAGTTCGACATCAAAAAATCATTCATAGTGAAGAAAGACCGTTTTCTTGTAACATATGTGATAAGGCATTCAAAACACATGATATTTTAGTAAGACATAAACGACTTCATACTGGAGAACAACCTGTTCCACGGGAAAAACAAAGAAGTTTACAACAACGGATTGAACCTGTAATAGACAGATATAGTTTTCCATATGAGTTTACACAAAATTTAGTTGAAAATCAAGCACCAATTCATACTGGAATTGATTCATTCTGTACTCCCAGTGTATCGAATTCATTTATTCCAGCACCAGCTGAAAATTCCCATCCATCGATTACCACGACCATTCAAGAAGGTGAAAGTGTGAAAAGTGAAAATTTAATAGACAATGAAGTTAAAACTGAACAAAAATATGATATTTGTGAAAGTAGTAACAGTAGCATTGGTGATATTTTGGATGCAGGTCCATCTAGTCCATTTATGGACGAAACCCCAATCAAAACAGAACAAAAATTAGAAATTGAATTAATAGTTAAGGATGAAGAGAATATTAAAATTGACGAAGAAATCAAAGTGAAAGAAGAAAATGATGAAGAAGAAGAAAAACCGTATTCATGCGATATATGTGATAAAAGATTTTCCAAACATAGAAATTTACGTAGACATAAACGACTTATCCATAATAAAGGTAAAAAATATCCTTGTGACGAATGTGATAAAGTATTTAATACACAAAGAGAATTGGTTTTACATGAACGAGATCATACTGGTGAAGAATGTTTTTCTTGTGACGAATGTGATATGACATTTACGAATACGAAAAATCTACGTAGACATCAAAAACTACATGCAAGGGATAAACCATTTTCATGTAATTTTTGTGATAAAACATTTCAATTCCACAGAAATTACGCTGAACATAAGAAAATTCATATTGTGGATAAACCTCATGCATGTGATATTTGTGAAAAAACATTTACCAGACTTCGAAGTTTAGTTGAACATAAACGAATGCATACTGGAGAAAGACCATTTGCTTGTGATCAATGTGATAAATCATTTACCAGTAATCGAACGTTAACAGCCCATAAAGGAATCCATACTGGGAGAAAACCTCATTTGTGTGATGATTGTGGTAAAGCATTTGCTAAAACACTTGATTTACAACGACATCAACGAATCCACACGGGAGAAAGACCGTTCACATGTGAACATTGTGGTAAAACTTTTGTAAATCGTTGTAATTTAGTTGAACATAGACGAATACATACGGGAGAGAAACCTTTTACCTGTGAAATTTGTGCGAAATCATTTACACAACGTATGAATTTATATCGACATAAAGTGACACATACGAAAGAGAAAAAGTTTTCATGTACTGTTTGTGATAAAACTTTCGGCTATAAATCAAGTTTATTGGAACATGAACGAATTATTCATTCAGGGGAAAAACGATTTTCGTGTGATGTTTGTGATAACAAATTTTACAGGCAAAGTTATTTGCTGAAACATAAAAAAATAGCACACGTTAAAGATCCACAACAAGTTTATGAATGCGATATTTGTTTTAAGCAATTTGCAAAACCTAATCGTTTAACTAATCATAAAAAGTCTCATATTGAAAAAGCTGTAAAAAACTTTTTAAAACAAAAAGTGTAA
- Protein Sequence
- MSSYSFHDINNLLIKYEEKLKTDHQINPEYAIKKEIQEEKPKEKPFSCDVCDRTFNQFVHLVSHKRIHTGEKSFLCDFCGKAFRYKNNLVDHKRIHSGEKPYECDVCKKSFTTHNDLVKHKRKHTGEKPYTCDVCAKSFTQKGNLVRHQKIIHSEERPFSCNICDKAFKTHDILVRHKRLHTGEQPVPREKQRSLQQRIEPVIDRYSFPYEFTQNLVENQAPIHTGIDSFCTPSVSNSFIPAPAENSHPSITTTIQEGESVKSENLIDNEVKTEQKYDICESSNSSIGDILDAGPSSPFMDETPIKTEQKLEIELIVKDEENIKIDEEIKVKEENDEEEEKPYSCDICDKRFSKHRNLRRHKRLIHNKGKKYPCDECDKVFNTQRELVLHERDHTGEECFSCDECDMTFTNTKNLRRHQKLHARDKPFSCNFCDKTFQFHRNYAEHKKIHIVDKPHACDICEKTFTRLRSLVEHKRMHTGERPFACDQCDKSFTSNRTLTAHKGIHTGRKPHLCDDCGKAFAKTLDLQRHQRIHTGERPFTCEHCGKTFVNRCNLVEHRRIHTGEKPFTCEICAKSFTQRMNLYRHKVTHTKEKKFSCTVCDKTFGYKSSLLEHERIIHSGEKRFSCDVCDNKFYRQSYLLKHKKIAHVKDPQQVYECDICFKQFAKPNRLTNHKKSHIEKAVKNFLKQKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -