Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997759.1:15581557-15583395[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.6e-05 0.00057 20.6 3.1 1 23 126 148 126 148 0.98

2 17 7e-05 0.0015 19.2 3.2 1 23 154 176 154 176 0.98

3 17 4.4e-06 9.5e-05 23.0 2.5 1 23 182 204 182 204 0.98

4 17 4.9e-07 1.1e-05 26.0 0.3 1 23 210 232 210 232 0.98

5 17 3.5e-07 7.6e-06 26.5 2.6 1 23 238 260 238 260 0.98

6 17 2.3e-06 5e-05 23.9 2.3 1 23 266 288 266 288 0.98

7 17 0.13 2.9 8.9 4.4 1 23 294 316 294 316 0.92

8 17 0.00091 0.02 15.7 0.9 1 23 322 344 322 344 0.97

9 17 0.00051 0.011 16.5 1.3 1 23 350 372 350 372 0.99

10 17 9.4e-07 2e-05 25.1 2.9 1 23 378 400 378 400 0.98

11 17 1.1e-05 0.00023 21.8 2.6 1 23 406 428 406 428 0.98

12 17 3.1e-05 0.00067 20.4 1.0 1 23 434 456 434 456 0.98

13 17 6.8e-05 0.0015 19.3 0.8 1 23 462 484 462 484 0.98

14 17 2.4e-05 0.00051 20.7 3.4 1 23 490 512 490 512 0.98

15 17 1.4e-05 0.00029 21.5 2.4 1 23 518 540 518 540 0.98

16 17 0.059 1.3 10.0 4.6 1 23 546 568 546 568 0.97

17 17 8.4e-05 0.0018 19.0 3.6 1 23 574 596 574 596 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.6e-05	0.00057	20.6	3.1	1	23	126	148	126	148	0.98
2	17	7e-05	0.0015	19.2	3.2	1	23	154	176	154	176	0.98
3	17	4.4e-06	9.5e-05	23.0	2.5	1	23	182	204	182	204	0.98
4	17	4.9e-07	1.1e-05	26.0	0.3	1	23	210	232	210	232	0.98
5	17	3.5e-07	7.6e-06	26.5	2.6	1	23	238	260	238	260	0.98
6	17	2.3e-06	5e-05	23.9	2.3	1	23	266	288	266	288	0.98
7	17	0.13	2.9	8.9	4.4	1	23	294	316	294	316	0.92
8	17	0.00091	0.02	15.7	0.9	1	23	322	344	322	344	0.97
9	17	0.00051	0.011	16.5	1.3	1	23	350	372	350	372	0.99
10	17	9.4e-07	2e-05	25.1	2.9	1	23	378	400	378	400	0.98
11	17	1.1e-05	0.00023	21.8	2.6	1	23	406	428	406	428	0.98
12	17	3.1e-05	0.00067	20.4	1.0	1	23	434	456	434	456	0.98
13	17	6.8e-05	0.0015	19.3	0.8	1	23	462	484	462	484	0.98
14	17	2.4e-05	0.00051	20.7	3.4	1	23	490	512	490	512	0.98
15	17	1.4e-05	0.00029	21.5	2.4	1	23	518	540	518	540	0.98
16	17	0.059	1.3	10.0	4.6	1	23	546	568	546	568	0.97
17	17	8.4e-05	0.0018	19.0	3.6	1	23	574	596	574	596	0.97

Sequence Information

Coding Sequence: ATGGCAAATAATTCATTTAATGATGTAAATAAGCATTTATTTGTCAACAAAGAAAATATAAAAGTTGAAAAACAAGTAAATACAGAATTAGTGGATGTTAAAGAAGAAATATTAGATGAAAATGTTAAAATAGAAGATGGAAAAATTAAAAATGAAATTCAAGAAGACAGTGTTACAATCGAACAAGGACGAGTTAAAAATGAAATATTAGAAGAATTAGATGTTAGTGTGAATCCTGAAATAATTTTTGTGAAGCAAGAAAATTTGTCTACAATTAATTGTGAAAACGAATTAAATACAGAATTTATTATAAAAGACGAAATATTCGATGTAAGTGTTTTAGAATCACAACAAGTTATAGCAGAAGGAAAACCATTTTCATGTGATATTTGTGAGAAAAAATTTAAGACTCAAAGGTATTTATCTGATCATAAACGCACTCACTCTGGAGAAAAACCATTTTCTTGTGAAATTTGTAAAAAAACATTTTCTCAAAAAGTCAGTTTAATTTGTCATATACGAACGCACACTGGAGAGAAACCATTTACATGTGATATTTGTAAGAAAACATTTACTATGCGAAGCACTTTAATTAAACATAAACGAATTCATTCTGAAGAAAAAGCATTTTCATGTGAAATTTGTGATAAAACATTTGCTCAGTCAAGCTCTTTAATTGTACATAAACGAATCCATTCTGGAGAAAAACGATTTTCATGTGAAATTTGCGAAAAATCATTTCGGCATAAAAGCAATTTAATTGTACATACACGAATGCACAGTAAAGAAAAACCATTTTCTTGTGAAATTTGTAATAAAACATTTAATCAGCAAAGTAGCTTAACTTTACATAAACGGAATCATAGTGGAGAAAAACCATTTTCCTGTGATATTTGTAAAAAATCATTTAAAATCAAGTTTAATTTAGATTGTCATAAACGAGCGCACAGTGAAGAACGACCATTTCCATGTGATACTTGTGGGAAAAGATTTGGTAATAAAAGGACTTTAGGCTATCATAAACAAATTCACTCTGGAGAAAAACCATATTCATGTGATATTTGTGAAAGGAGATTTAGTATTCGAAGGTATTTAGTTGATCATAAACGAACGCATTCTGGAGAAAAACCGTTTTCCTGTAATATTTGTAATAAAACCTTTACTCAACAAAGCACTTTAAATTTGCATAAAAGAAGTCACTCTGATGAAAAACCATTTTCTTGTGATATTTGTGAGAAAAAATTTAAAACTCAAAGGTATTTATCTGATCATCAACGCTCTCACTCTGGAGAAAAACCATTTTCTTGTGAAATTTGTAACAAAACATTTAAAATACAAGTCAGTTTAATTAGTCATAAACGAATGCACGGTGGAGAAAAACCATTTTCATGTGATATTTGTAAAAAAACATTTGGTTATCAAAGTAGTTTAGTTGATCATAAACAAATTCACGGCAGGGAAAAATCATTTTCATGTAATACTTGTGATAAAACATTTATTCAACAACACGCGTTAAATTTACATAAACGATCTCATACTGGAGAAAAAATATTTTCTTGTGATTTTTGCGATAAAAAATTCATTCAGCAAAGCACCTTAATTACACACAAACGATCTCACACTGGAGAAAAACCATTTTCTTGTGATATTTGTGAAAAATCATTTAAAATCAAGTATTATTTAGATTGTCATAAACGAACGCACAGTAAAGAGAGGCCATTTTCCTGTGATATTTGCGGAAAATCATTTAAACAAAAAAGTTGTGTATACGTACATAAACGATTACACAACGATGGTGAAAATGAATCCACATTGAAGAAAAAAAGCATTTCCATGTGA
Protein Sequence: MANNSFNDVNKHLFVNKENIKVEKQVNTELVDVKEEILDENVKIEDGKIKNEIQEDSVTIEQGRVKNEILEELDVSVNPEIIFVKQENLSTINCENELNTEFIIKDEIFDVSVLESQQVIAEGKPFSCDICEKKFKTQRYLSDHKRTHSGEKPFSCEICKKTFSQKVSLICHIRTHTGEKPFTCDICKKTFTMRSTLIKHKRIHSEEKAFSCEICDKTFAQSSSLIVHKRIHSGEKRFSCEICEKSFRHKSNLIVHTRMHSKEKPFSCEICNKTFNQQSSLTLHKRNHSGEKPFSCDICKKSFKIKFNLDCHKRAHSEERPFPCDTCGKRFGNKRTLGYHKQIHSGEKPYSCDICERRFSIRRYLVDHKRTHSGEKPFSCNICNKTFTQQSTLNLHKRSHSDEKPFSCDICEKKFKTQRYLSDHQRSHSGEKPFSCEICNKTFKIQVSLISHKRMHGGEKPFSCDICKKTFGYQSSLVDHKQIHGREKSFSCNTCDKTFIQQHALNLHKRSHTGEKIFSCDFCDKKFIQQSTLITHKRSHTGEKPFSCDICEKSFKIKYYLDCHKRTHSKERPFSCDICGKSFKQKSCVYVHKRLHNDGENESTLKKKSISM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -