Ccar006533.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:52691305-52693401[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.2e-06 0.00018 22.2 1.1 1 23 76 98 76 98 0.98 2 17 1.3e-05 0.00028 21.6 1.2 1 23 105 127 105 127 0.98 3 17 0.0032 0.069 14.0 5.4 2 23 134 156 133 156 0.96 4 17 0.0022 0.048 14.5 0.7 5 23 164 182 162 182 0.94 5 17 1.2e-05 0.00026 21.6 1.3 1 23 188 210 188 210 0.96 6 17 4.4e-06 9.4e-05 23.0 6.2 1 23 216 238 216 238 0.98 7 17 2.4e-06 5.2e-05 23.9 0.8 1 23 244 266 244 266 0.98 8 17 1.2e-05 0.00026 21.6 0.6 1 23 272 294 272 294 0.98 9 17 5.4e-06 0.00012 22.7 2.1 1 23 300 322 300 322 0.99 10 17 2 43 5.2 0.4 8 23 413 428 412 428 0.94 11 17 9.9e-05 0.0021 18.8 2.2 2 23 435 457 434 457 0.96 12 17 0.00054 0.012 16.5 0.2 3 23 463 483 461 483 0.92 13 17 0.00012 0.0027 18.5 0.9 1 23 489 511 489 511 0.96 14 17 4.4e-06 9.4e-05 23.0 6.2 1 23 517 539 517 539 0.98 15 17 2.4e-06 5.2e-05 23.9 0.8 1 23 545 567 545 567 0.98 16 17 4e-05 0.00087 20.0 1.3 1 23 573 595 573 595 0.98 17 17 1.8e-05 0.00038 21.1 1.5 1 23 601 623 601 623 0.98
Sequence Information
- Coding Sequence
- ATGTCAAATAATCAATTTCACTACGATAATAATTCTGAATTAAATGTTTCCAAAGACATTAAAACTGAACCTTTGGATACAAAAATCATGATTAAAGAAGAAGTTATAGAAAATATAGAATTAGAAGACGAACATTTTCCTTCTGAAATATTAATTAAAGCTGAATTTTTGGAAGAATATGAAGAAAATAAATTTTTGGAACAAATATATTCTGAGCCCATTTCATTTACGTGTAGTAAGTGTGATAAAATGTTTTCTACAAAAATGTTGTTAGAAGCCCATAACCGTATTCATGATGAACCTCCTGAGCGTTTTCCATGCAATATTTGTAATGAAAAATTTTCTAACAAATATGCTTTATCTAAACATAAAGAAACTCATAATTTGAGAAAAGCTTTGACATGTCATGTTTGTGATCAACAATTTGCCAAAAGAGCCTCTTTAAAGCATCATAAACGAAGATTTCATCGACAAAAGAACTTATGTATCGTCTGTAATAAAACCTTTACACGGACCAGCGCTTTAATTATACATAAACGACTTCATAGTGGAGAAAAGCCATATTTATGTGAATTTTGTGATAAAACGTTTAACCGGTATGATAATTTAATTGTACACAGGCGAAATCATACTGGAGAACAACCATATTGCTGTAATTATTGTGGGAAAAAATTTACTAATAATGCTAATTTTAAAAAACATAAACGAATTCATACCGGGGACAAACCGTATTCTTGTGAGGTTTGTGGAAAAACATTTTCTCAAATAAGTAGCTTAAACGTACATAAACAAAAACATACCGAAAACCACTCATTTTCCTGTGAATATTGCGATAAAACATTTGCAGTGAAGAGTTTCTTAGTCGTACATACTCGAGTTCACACGGGCGAAAAACCATATAGATGTAATATTTGTTATAAATTATTTACTCAAAAAAGCAGTTTAAATGGACATATGCGAAGTCATACAGAAATTTCGGATACAAAAACAATTCAAGAAAATAAAGAAAATGAACGAGAGCCATTGCCAGAAAGTGAGGTAAATGAACTTTATACCGATAAAAGTATGCAATCAGAAGAAGAAGAAGAAAGTGAAGCAAATGAACTTGAAGATGAAAGTACACAATCAGAAGACGAACCACTTTCTAACTTAATAACTAAGAATGAATTATTGGAAGAAAGTGAGGAAAATGAACTTTATGAACAACCGCTTTCTGAGCGTTTGTCCGCACGTGAAAAAACTTTTTCTAACAAAAGTTTTTTATCTGAACATAACGAAACTCATAACTTGAGAAAAGCATTGACATGTCATGTTTGTGATCAACAATTTGCGAAAAGAATCGACTTAAAGAGGCATCAACGAAAAGTTCATGGCAAAAAGATCGTATGTATCGTCTGTAATAAAACCTTTACTCGGACGAGCGCTTTAATTATACATAAACGAATTCATAGTGGAGAAAAGCCATATTTATGTGAATTTTGTGATCAAAAATTTGTTCGGTATGATAATTTAATTGTACACAGGCGAAATCATACTGGAGAACAACCATATTGCTGTAATTATTGTGGGAAAAAATTTACTAATAATGCTAATTTTAAAAAACATAAACGAATTCATACCGGGGACAAACCGTATTCTTGTGAGGTTTGTGGAAAAACATTTTCTCAAATAAGTAGCTTAAACGTACATAAACAAAAACATACCGAAAACCACTCATTTTCCTGTGAATATTGCGATAAAACATTTGCAGTGCATAGTTTCTTAGTCGCACATACTCGAGTTCACACGGGAGAAAAACCATATAGATGTAATGTTTGTTATAAATTATTTACTCAAAAAAGCAGTTTAAATGGACATATGCGAGGTCATACAGAAATTTCGGATCCAATAACAATTCAAGAAAATAACAAAAATGAACGGGAGGTATTGCCAGAATCGTTAATTCAAAGTGAAAACATACAATCAGAAGACGAAACACTTTCTAACTTAACTAGGAGTGAATTACCGGAAGAAAGTGAGGACAATGAAATTTATGAACAAACGCTTTCTGAGCGTTTGGCTGCACGTAGTATTTGTAATAAAATTTTTTCTAACTAA
- Protein Sequence
- MSNNQFHYDNNSELNVSKDIKTEPLDTKIMIKEEVIENIELEDEHFPSEILIKAEFLEEYEENKFLEQIYSEPISFTCSKCDKMFSTKMLLEAHNRIHDEPPERFPCNICNEKFSNKYALSKHKETHNLRKALTCHVCDQQFAKRASLKHHKRRFHRQKNLCIVCNKTFTRTSALIIHKRLHSGEKPYLCEFCDKTFNRYDNLIVHRRNHTGEQPYCCNYCGKKFTNNANFKKHKRIHTGDKPYSCEVCGKTFSQISSLNVHKQKHTENHSFSCEYCDKTFAVKSFLVVHTRVHTGEKPYRCNICYKLFTQKSSLNGHMRSHTEISDTKTIQENKENEREPLPESEVNELYTDKSMQSEEEEESEANELEDESTQSEDEPLSNLITKNELLEESEENELYEQPLSERLSAREKTFSNKSFLSEHNETHNLRKALTCHVCDQQFAKRIDLKRHQRKVHGKKIVCIVCNKTFTRTSALIIHKRIHSGEKPYLCEFCDQKFVRYDNLIVHRRNHTGEQPYCCNYCGKKFTNNANFKKHKRIHTGDKPYSCEVCGKTFSQISSLNVHKQKHTENHSFSCEYCDKTFAVHSFLVAHTRVHTGEKPYRCNVCYKLFTQKSSLNGHMRGHTEISDPITIQENNKNEREVLPESLIQSENIQSEDETLSNLTRSELPEESEDNEIYEQTLSERLAARSICNKIFSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -