Ccar022367.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:48019723-48021699[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1e-05 0.00022 21.9 4.0 1 23 102 124 102 124 0.98 2 16 2.1e-06 4.6e-05 24.0 1.6 1 23 129 151 129 151 0.98 3 16 1.1e-05 0.00023 21.8 0.7 1 23 157 179 157 179 0.98 4 16 2.4e-06 5.3e-05 23.8 3.5 1 23 185 207 185 207 0.98 5 16 2.4e-05 0.00052 20.7 4.0 1 23 213 235 213 235 0.98 6 16 1.9e-05 0.00041 21.0 0.5 1 23 241 263 241 263 0.98 7 16 0.0037 0.081 13.8 1.5 1 23 269 291 269 291 0.98 8 16 4.8e-06 0.0001 22.9 2.4 1 23 297 319 297 319 0.98 9 16 3.3e-05 0.00071 20.3 3.4 1 23 407 429 407 429 0.98 10 16 2e-06 4.2e-05 24.1 0.3 1 23 435 457 435 457 0.97 11 16 2.8e-06 6.1e-05 23.6 1.7 1 23 463 485 463 485 0.98 12 16 2.1e-07 4.6e-06 27.2 1.8 1 23 491 513 491 513 0.98 13 16 0.0025 0.055 14.3 3.4 1 23 519 541 519 541 0.98 14 16 1.5e-05 0.00032 21.3 0.3 1 23 547 569 547 569 0.98 15 16 0.0011 0.024 15.5 1.1 1 23 575 597 575 597 0.97 16 16 0.00011 0.0024 18.6 2.4 1 23 603 625 603 625 0.98
Sequence Information
- Coding Sequence
- ATGGAAAATAGTTCATTTAAAGATAAAATTGATCCTTTATTGATCAATGAAGAAAACAACATTAAACATGAACAAGATTTAAATAAAGAAACACTGAACGAAAATGTTCAAATGGAAAAAAGTGATTTACTGACACAGGTTTTAATTAAAGAAGAAATAGGCATGGAAAATGTTATAATTAAAGAAGAAAATGTTATCATGGAATATCAACCAATTTATAATGAAAATGAAAAGTTGAAACACCATAAGTTGAAAGTAGGTGAAAAATTAAATGAAATTAATTCAAAACCACTAGAAAAGCTTTTTCCATGTGACTTTTGTGGTAAAACATTTAAAAAGAAGTGTAATTTAAATATCCATGAACGAACTCACAAGGAAAAATCATATCCATGTGATTTTTGTAATAAAAAATTTTCGCGTCAAGATAACCTTATGTTACATAAAAGAATTCATACCGGAGAAAAACCATTTTCATGTGAAATTTGTGGTAAATCATTTTCTCAGCCTCGACGTTTAAGTCAACATAATCGAATCCACACTGGTGAAAAACCATTTTCTTGTGAAATTTGTAATAAAAAATTTCGTGATCATAGTAATTTAATTGAACATAAACGAACCCATACCGGAGATAAACCATTTTCTTGTGAAATTTGTAATAAAAAATTTCGTTATCAAAGTAATTTCAGTGAACATAAACGAAGACATACTGGTGAAAAACCATTTTCATGTGATGTGTGTGATAAAACATTTTCTCAGTTGCAAGGTTTAGTTCAGCATAAAAGAATCCATACTGGTGAAAAACCATTTTCTTGTAATATTTGTAATCGAAAATTTAGTTGGCGTGGTAGTTTTATTGTACATAAACGGTCTCATACTGGTGAAAAACCATTTTCATGTGAAGTTTGTGATAGAAAATTTACTAATTCACGTAGTTTAACGAAACATAAAAGGATTCACATCCAAGGCGATGAAGTATTTGAAGAAGAAAATGATTTAATTAAAAAAGAAATACTTGAAATTGATGAAAACCCTTTTTTACTTGGGTTAGAAAATGAAAAATTTGTGAAAAATGAAATTATTGCAGAAGAAAATAAAGAAAAATTAAATGTGGAGCAAATATTGATTAAAGAGGAAGCATTAGAAGAAAAGAATACAATTACAGATGAGGATGAAACCACTAAATTGGAGGTTAAAACAATAAGCCAAAAAATTAAAAAATTTTCCTGTGCTTTTTGTAATAAAACATTCACTCTGCGAAGTAATTTAATTGCTCATCAATGCACTCATACCGCTGAAAAACCATTTCCATGTGTAATTTGTGGTAAATCGTTTTCTCAGTCTCGACTTTTAATTCGACATAATCGAATCCATACTGGTGAAAAACCATTTTCTTGTGAAATTTGTGATAAAAAATTTCGTGATCAACGTACTTTAATCGACCATAAACGAACTCATACCGGGGAAAAACCGTTTTCTTGTGAAATTTGTGGTAAAAAATTTACACAACAAAGTGGATTAAAACGACATAAAAGACTGCACACGGGAGAAAAACCATTTTCATGTAATGATTGTGGTAAAAAATTTTCCTGTGGAAATAATTTAAAAGACCATAAACGAATTCATACTGGTGAAAAACCATTTTCATGTGATGTGTGTGATAAAACTTTTTCTCAGTTGCAAGGTTTAATTCAACATGAAAGGATCCATACTGATGAAAAACCATTTGCTTGTAATATTTGTGATCGAAAATTTAGTTGGCGAAGTAGTTTTATTGTACATAAACGGTCTCATATGGATGAAAAATCATTTTCATGTGAAACTTGTGATAGTAAATTTACAAATTCAAATAGTTTAACGAGACATAAAAGAATTCACAGCCAAGGTGATGAAGTATTTGAAGAAGAAAATGATGTAATTAAAGAAGAATTACTCGACATTGATGAAAACCCTCTTTTACTTGGGCTAGATAATGGATAA
- Protein Sequence
- MENSSFKDKIDPLLINEENNIKHEQDLNKETLNENVQMEKSDLLTQVLIKEEIGMENVIIKEENVIMEYQPIYNENEKLKHHKLKVGEKLNEINSKPLEKLFPCDFCGKTFKKKCNLNIHERTHKEKSYPCDFCNKKFSRQDNLMLHKRIHTGEKPFSCEICGKSFSQPRRLSQHNRIHTGEKPFSCEICNKKFRDHSNLIEHKRTHTGDKPFSCEICNKKFRYQSNFSEHKRRHTGEKPFSCDVCDKTFSQLQGLVQHKRIHTGEKPFSCNICNRKFSWRGSFIVHKRSHTGEKPFSCEVCDRKFTNSRSLTKHKRIHIQGDEVFEEENDLIKKEILEIDENPFLLGLENEKFVKNEIIAEENKEKLNVEQILIKEEALEEKNTITDEDETTKLEVKTISQKIKKFSCAFCNKTFTLRSNLIAHQCTHTAEKPFPCVICGKSFSQSRLLIRHNRIHTGEKPFSCEICDKKFRDQRTLIDHKRTHTGEKPFSCEICGKKFTQQSGLKRHKRLHTGEKPFSCNDCGKKFSCGNNLKDHKRIHTGEKPFSCDVCDKTFSQLQGLIQHERIHTDEKPFACNICDRKFSWRSSFIVHKRSHMDEKSFSCETCDSKFTNSNSLTRHKRIHSQGDEVFEEENDVIKEELLDIDENPLLLGLDNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -