Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:68001499-68005452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7.2e-05 0.0016 19.2 2.3 1 23 153 175 153 175 0.98

2 17 1.8e-06 3.9e-05 24.2 0.7 1 23 181 203 181 203 0.98

3 17 0.00032 0.007 17.2 0.7 1 23 209 231 209 231 0.98

4 17 0.00044 0.0096 16.7 4.1 1 23 237 259 237 259 0.96

5 17 8.6e-06 0.00018 22.1 0.3 1 23 265 287 265 287 0.98

6 17 0.00016 0.0035 18.1 1.8 1 23 293 315 293 315 0.97

7 17 0.00011 0.0024 18.6 2.5 1 23 321 343 321 343 0.97

8 17 2.3e-05 0.0005 20.7 3.1 1 23 349 371 349 371 0.98

9 17 3.4e-06 7.4e-05 23.4 0.4 1 23 377 399 377 399 0.98

10 17 6.2e-05 0.0013 19.4 3.0 1 23 405 427 405 427 0.96

11 17 6.1e-06 0.00013 22.6 1.4 1 23 433 455 433 455 0.99

12 17 3e-05 0.00064 20.4 1.3 1 23 461 483 461 483 0.99

13 17 1.8e-05 0.0004 21.1 3.1 1 23 489 511 489 511 0.97

14 17 9.7e-06 0.00021 21.9 6.1 1 23 517 539 517 539 0.98

15 17 1.7e-05 0.00037 21.2 2.6 1 23 545 567 545 567 0.99

16 17 0.009 0.2 12.6 5.0 1 23 573 595 573 595 0.97

17 17 0.00033 0.0072 17.1 0.5 1 20 601 620 601 622 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7.2e-05	0.0016	19.2	2.3	1	23	153	175	153	175	0.98
2	17	1.8e-06	3.9e-05	24.2	0.7	1	23	181	203	181	203	0.98
3	17	0.00032	0.007	17.2	0.7	1	23	209	231	209	231	0.98
4	17	0.00044	0.0096	16.7	4.1	1	23	237	259	237	259	0.96
5	17	8.6e-06	0.00018	22.1	0.3	1	23	265	287	265	287	0.98
6	17	0.00016	0.0035	18.1	1.8	1	23	293	315	293	315	0.97
7	17	0.00011	0.0024	18.6	2.5	1	23	321	343	321	343	0.97
8	17	2.3e-05	0.0005	20.7	3.1	1	23	349	371	349	371	0.98
9	17	3.4e-06	7.4e-05	23.4	0.4	1	23	377	399	377	399	0.98
10	17	6.2e-05	0.0013	19.4	3.0	1	23	405	427	405	427	0.96
11	17	6.1e-06	0.00013	22.6	1.4	1	23	433	455	433	455	0.99
12	17	3e-05	0.00064	20.4	1.3	1	23	461	483	461	483	0.99
13	17	1.8e-05	0.0004	21.1	3.1	1	23	489	511	489	511	0.97
14	17	9.7e-06	0.00021	21.9	6.1	1	23	517	539	517	539	0.98
15	17	1.7e-05	0.00037	21.2	2.6	1	23	545	567	545	567	0.99
16	17	0.009	0.2	12.6	5.0	1	23	573	595	573	595	0.97
17	17	0.00033	0.0072	17.1	0.5	1	20	601	620	601	622	0.94

Sequence Information

Coding Sequence: ATGGTTTTGTTAATTAATTATACCGAAATGTCAAAAGAATTTTACTCAAATAATGATGAAATGGATGAGGATATTGATGAAACACAAATAGTTGAAAATGACAAAACAAAAATTGAAATAGAGTTACAAACAGGACTAATTTTAATTGATGGACTAACAAGTATTGAAAATGGTGAACAAATATTGAAAAAAGAAAAAATTCAAATTGAACAAGAGTTAAATTTACAATTAATTGATTGCAATGACGAAGAAATATCAAAAGAATTTTATTCAAACCATGATGAAATGGATGAGAATATTGATGAGATGTTGAAGAAATCAAAAATTAAAATTGAACAAGCTTTACATTCGGAATTAATTATAAAAGATGAAGATTTCGACGAAATGTTTAACAGATGTGAATCAGAAAATGATGAAATGTTAAAAGAAATTCACACAAATACACAAGAAGAGCTTTTTTCGTGTGATGTTTGTAACCAAAAATTCAACAAAAAAACTAGCTTGAAAATACATAGACGAGTTCATTCTGGAGAGAAACCTTATTCTTGTAATATTTGTAATAAAACATTCAAAGAAAAAGGTAATCTTGCTGTACATGAACGAAGACATACCGGCGAAAAACCCTATTCATGTGAAATTTGTGATAAAACATTCGTTGCTGTTGGTGATCTATGTAACCATAAAAAAATTCATACAGGAAAAAAGCCGCATGCATGTGATGTTTGTGACCAAAAGTTCAGAACTAGTACCAAATTAACTTATCATAAACGAACTCATACAGGAGAAAAACCTTACGTATGTGATGTATGTGATAACGCATTCACCAGCAACGGCAATTTAGTTAGACATAAAAGAAGCCATACAGGAGAAAAACCTTATTCTTGTAATGTTTGTAATAAAAAATTCACTCATCCTGAGAGTGTGGTTAAACATAAACTTGTTCATTCTGAAGAAAAACCTTATTCTTGTAATATTTGTAATAAAACATTCAGAGATAAATGTTATGCTGCTAGACATATGCTAGGGCATACCGGAGAAAAACGATATTCTTGTAATATTTGTAATAAAACATTCAGAGAAAAATGTAATCTTGCTGTACATGAACGTAGACATACCGGCGAAAAACCCTATTCATGTGAAATTTGTGATAAAACATTCGCTACTACTGGTGATCTAATTAAACATAAAAAAATTCATACAGGAAAAAAGGCGCATGCATGTGATGTTTGTGATAAAAAATTCAAATCCATTTACAATTTAAGTAGTCACAAACGGACTCATACCGGAGAAACACCTTACTCATGTGATGTTTGTAATAAATCATACAGATATAGTGGTGATTTAGTTAAACATAAACGAACACATACTCAAGAAAAACCTTTTAAATGTGAAATTTGTGATCAAAAATTTACTTCTAATTTACTTTTATTGAGACACAAACGAATTCATACAGCAGAAGAATATTTTGATTGTAATGTTTGTGGTAAAATATTCTACCGTAAAGAACATTTAGATACTCATAAAAGAACTCATACGGGAGAAAGACCTCATTCATGCAATGTTTGTAATAAAACATTTACTCAGCACAGCAGCCTAAATGCACACAAACGAACTCATACAGGAGAGAAGCCATATACATGTGATGTTTGTGATAAAGCATTCAGTCTGAAGCATCCTTTAACTAGGCATAAACGAACACATTTAGGAGACAAGCCATATTGTTGTTATGTTTGTTATAGAACATTTAGCATGAAAATAAACTTTGTAAAACATAGAAGAATTCATAGTGATCAAACTCCATATGCGTGTGAAGATTGCGACAGAATATTTACAAATAAAAACGAATTGAATGATCATAAACATCTAAATGTTATTATTTTAATTAACAAATAA
Protein Sequence: MVLLINYTEMSKEFYSNNDEMDEDIDETQIVENDKTKIEIELQTGLILIDGLTSIENGEQILKKEKIQIEQELNLQLIDCNDEEISKEFYSNHDEMDENIDEMLKKSKIKIEQALHSELIIKDEDFDEMFNRCESENDEMLKEIHTNTQEELFSCDVCNQKFNKKTSLKIHRRVHSGEKPYSCNICNKTFKEKGNLAVHERRHTGEKPYSCEICDKTFVAVGDLCNHKKIHTGKKPHACDVCDQKFRTSTKLTYHKRTHTGEKPYVCDVCDNAFTSNGNLVRHKRSHTGEKPYSCNVCNKKFTHPESVVKHKLVHSEEKPYSCNICNKTFRDKCYAARHMLGHTGEKRYSCNICNKTFREKCNLAVHERRHTGEKPYSCEICDKTFATTGDLIKHKKIHTGKKAHACDVCDKKFKSIYNLSSHKRTHTGETPYSCDVCNKSYRYSGDLVKHKRTHTQEKPFKCEICDQKFTSNLLLLRHKRIHTAEEYFDCNVCGKIFYRKEHLDTHKRTHTGERPHSCNVCNKTFTQHSSLNAHKRTHTGEKPYTCDVCDKAFSLKHPLTRHKRTHLGDKPYCCYVCYRTFSMKINFVKHRRIHSDQTPYACEDCDRIFTNKNELNDHKHLNVIILINK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332839;
90% Identity: -
80% Identity: -