Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:6129556-6131145[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.6e-05 0.00099 19.8 6.8 2 23 110 131 109 131 0.97

2 15 1.3e-06 2.9e-05 24.6 0.4 1 23 137 159 137 159 0.98

3 15 5.1e-05 0.0011 19.7 0.4 1 23 165 187 165 187 0.98

4 15 2.4e-05 0.00052 20.7 3.6 1 23 193 215 193 215 0.98

5 15 6.4e-07 1.4e-05 25.7 3.8 1 23 221 243 221 243 0.98

6 15 0.00045 0.0098 16.7 4.2 1 23 249 271 249 271 0.98

7 15 5.6e-06 0.00012 22.7 1.4 1 23 277 299 277 299 0.97

8 15 1.2e-05 0.00027 21.6 3.0 2 23 305 326 304 326 0.97

9 15 4.1e-06 8.9e-05 23.1 0.6 1 23 332 354 332 354 0.98

10 15 5.1e-05 0.0011 19.7 0.4 1 23 360 382 360 382 0.98

11 15 2.4e-05 0.00052 20.7 3.6 1 23 388 410 388 410 0.98

12 15 5.8e-07 1.2e-05 25.8 2.4 1 23 416 438 416 438 0.98

13 15 3.6e-06 7.9e-05 23.3 6.8 1 23 444 466 444 466 0.98

14 15 1.2e-05 0.00026 21.6 0.4 1 23 472 494 472 494 0.98

15 15 5.4e-07 1.2e-05 25.9 0.7 1 23 500 522 500 522 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.6e-05	0.00099	19.8	6.8	2	23	110	131	109	131	0.97
2	15	1.3e-06	2.9e-05	24.6	0.4	1	23	137	159	137	159	0.98
3	15	5.1e-05	0.0011	19.7	0.4	1	23	165	187	165	187	0.98
4	15	2.4e-05	0.00052	20.7	3.6	1	23	193	215	193	215	0.98
5	15	6.4e-07	1.4e-05	25.7	3.8	1	23	221	243	221	243	0.98
6	15	0.00045	0.0098	16.7	4.2	1	23	249	271	249	271	0.98
7	15	5.6e-06	0.00012	22.7	1.4	1	23	277	299	277	299	0.97
8	15	1.2e-05	0.00027	21.6	3.0	2	23	305	326	304	326	0.97
9	15	4.1e-06	8.9e-05	23.1	0.6	1	23	332	354	332	354	0.98
10	15	5.1e-05	0.0011	19.7	0.4	1	23	360	382	360	382	0.98
11	15	2.4e-05	0.00052	20.7	3.6	1	23	388	410	388	410	0.98
12	15	5.8e-07	1.2e-05	25.8	2.4	1	23	416	438	416	438	0.98
13	15	3.6e-06	7.9e-05	23.3	6.8	1	23	444	466	444	466	0.98
14	15	1.2e-05	0.00026	21.6	0.4	1	23	472	494	472	494	0.98
15	15	5.4e-07	1.2e-05	25.9	0.7	1	23	500	522	500	522	0.98

Sequence Information

Coding Sequence: ATGGCGAGTAAGTCATTTCAAAACGAAAATACTGATTTATTTATCAGTGAAGAACAAATAAATAGAAACAAATTAAATACAGAAGTGATTATTAAAAATGAAATATTTGATGTGAGTGAAAGTGATTCAATAGATTATAAAGAACCATTCAAAGGTGGACATGAAGGAATTAAAGAAGAGGGAATACTTGAAGAAACTGATATTAAAATGGAGAATGAACGAATTAAACTTGAACAACAATTAAATACTGAATTAATTATTAAAGATGAAATATTTGATGGAAATGATTTAGAATTTCATAATATTGAAAATGAAGAAACATCTTTAACATGTGAAGTGTGTGATAAAACTTTTAATAAAAAACACCATTTAACTAGCCATAAACGAACTCATACTGATAAAAAACGTTTTTCATGTGAAGTGTGTGATAAATCATTTAATAATAAAATCGACTTAATTCGGCATGAACGAATTCATACTGGGGAAAAACCTTTTTCCTGTGCAATTTGTAACAAAGCTTATACACAAAAATATGTTTTAATTCGACATGAACGAATTCATACCAAGGAAAAATCTTTTTCATGTGACATGTGTGATAAAACATTTTCACAGACCTGTAATTTAATTCAACATAAACGAATTCATACTGGGGAAAAACCATTTTCATGTGACATGTGTGATAAAACATTTACTCAGAAAAGTCATTTAATTCAACATAAACGAATTCATACTGGGGAAAAACCATTTTCCTGTGAACTGTGTGATAAAACATTTAAATGTAAAGGCAACTTAGTTCAACATAAACGAACTCATACAGGTGAAAAACCTTTTGCATGTGAAGTTTGTGATAAAACGTTTTCTATGCGAAGCAGTTTAAAACAACATAAAAGATTACATAGCGGTGAAAAACTATCCTGTCAAGATTGTGATAAAAAATTTGCTCAACAAAGCTGTTTAATTATGCATAGACGGACTCATAGTGTAGAAAAACCTTTCCCATGTGGAAATTGTGATAAAGCTTTTATTCAAAAACATGATTTAATTCGTCATGAACGAATTCATACTGGGGAAAAACCTTTTTCCTGTGCAATTTGTAACAAAGCTTATACACAAAAATATGTTTTAATTCGACATGAACGAATTCATACCAAGGAAAAACCTTTTTCATGTGACATGTGTGATAAAACATTTTCACAGACCTGTAATTTAATTCAACATAAACGAATTCATACTGGGGAAAAACCATTTTCATGTGACATGTGTGATAAAACATTTACTCAGGCCAGTCATTTAATTCAACATAAACGAATTCATACTGGGGAAAAACCATTTTCATGTGAACTGTGTGATAAAACATTTACGCATAATTATCATTTAATTCGACATAAACGAACTCATACAGGTGAAAAACCTTTTTCATGTGACATGTGTGATAAAACATTTGCGCGGGATTCTGGTTTAATTCAACATAAACGAATTCATACAGGTGAAAAACCTTTTTCATGTGACATTTGTGATAAAACATTTGCACAGACCAGTAATTTAATTCAACATAAACGAATTCATACTGGTGAAAAACCTTTTCCATGA
Protein Sequence: MASKSFQNENTDLFISEEQINRNKLNTEVIIKNEIFDVSESDSIDYKEPFKGGHEGIKEEGILEETDIKMENERIKLEQQLNTELIIKDEIFDGNDLEFHNIENEETSLTCEVCDKTFNKKHHLTSHKRTHTDKKRFSCEVCDKSFNNKIDLIRHERIHTGEKPFSCAICNKAYTQKYVLIRHERIHTKEKSFSCDMCDKTFSQTCNLIQHKRIHTGEKPFSCDMCDKTFTQKSHLIQHKRIHTGEKPFSCELCDKTFKCKGNLVQHKRTHTGEKPFACEVCDKTFSMRSSLKQHKRLHSGEKLSCQDCDKKFAQQSCLIMHRRTHSVEKPFPCGNCDKAFIQKHDLIRHERIHTGEKPFSCAICNKAYTQKYVLIRHERIHTKEKPFSCDMCDKTFSQTCNLIQHKRIHTGEKPFSCDMCDKTFTQASHLIQHKRIHTGEKPFSCELCDKTFTHNYHLIRHKRTHTGEKPFSCDMCDKTFARDSGLIQHKRIHTGEKPFSCDICDKTFAQTSNLIQHKRIHTGEKPFP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -