Ccar008916.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997757.1:44567275-44569065[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00012 0.0025 18.6 0.9 1 23 89 111 89 111 0.97 2 17 7.1e-07 1.5e-05 25.5 0.1 2 23 118 139 117 139 0.96 3 17 1.9e-05 0.0004 21.0 4.2 1 23 145 167 145 167 0.98 4 17 4.3e-07 9.3e-06 26.2 2.5 1 23 173 195 173 195 0.98 5 17 0.0002 0.0043 17.8 5.3 1 23 203 225 203 225 0.98 6 17 4.6e-06 9.9e-05 23.0 1.7 1 23 231 253 231 253 0.98 7 17 3.6e-06 7.8e-05 23.3 0.5 1 23 258 280 258 280 0.98 8 17 1.9e-05 0.0004 21.1 5.1 1 21 286 306 286 308 0.95 9 17 2.6e-05 0.00055 20.6 0.2 1 23 314 336 314 336 0.97 10 17 8.2e-06 0.00018 22.2 1.3 3 23 344 364 342 364 0.98 11 17 0.00013 0.0028 18.4 0.8 1 23 370 392 370 392 0.95 12 17 4.3e-05 0.00093 19.9 3.6 2 23 399 420 398 420 0.96 13 17 5.6e-05 0.0012 19.5 1.0 1 23 426 448 426 448 0.96 14 17 0.027 0.59 11.1 2.1 1 23 454 476 454 476 0.93 15 17 0.00054 0.012 16.4 4.7 1 23 482 504 482 504 0.97 16 17 0.00036 0.0078 17.0 3.3 1 23 510 532 510 532 0.96 17 17 8.3e-06 0.00018 22.2 1.8 1 23 538 560 538 560 0.97
Sequence Information
- Coding Sequence
- ATGTCTAATTATTCCTTCATTGATGTAAATAATACTGAATTAATTAAAGAAGAAAACATTAAACAAGAAGAAGAATTAACTGAAGATGAAAGTTTTAAAATTGAAGAAGTATTTATCAAAAAAGAAATCGATGATGAAATACTACATGAACCTTATTCCTGTGTTGATGTAGTGTTAAAAGAATCTCAATCAAGCTTTTCAAACGACGATGGAATATTACAAGAACCTCATTCTTTTAGTAAAACAGAAATATTGCAAGGACCTCATTCATGTGAAATTTGTAATCAAACATTCATCACAATCGAAAATTTAACTGAACATCGACAAATTCATAATGAGAAAAAAAGTTTACCTTGCGACGGTTGTGACAAATCATTTCCCGATTACAGCCAATTACTAAGGCATCAAAGAATCCACACCGGCGAGAAACCATTTTCATGTGATCATTGTGATAAAACATTTTCGCAGCTTGCTCATTTAGCTAGCCATAAACGACTTCATACCGGTGAAAAACCTTTCTCTTGTGATAAATGTGATAAAAAATTCTCCAATAAAAGTAATTTAATTAAACACAATCGAATTCATACTGGAGAACAAACACATTCATTTTCATGTGACGTTTGTTCAAAAACATTTACACAACAGAGCCATTTAATTTGTCATCAAAGGATTCATACCGGAGAAAAACCATATTCATGTGATGAATGTGATAAGAGCTTTAATCGACCTGTCAATTTATTAGAGCACAAACGGCATCATACCGGTGATAAATTTTCATGTACTGTTTGTGGTAAGACATTTATTCGACGTTACGATTTAGCTGAACACAGTCGAATTCATAGTGGAGATAAACCTTTCTCGTGTGACGAATGTGATAAAAAATTTACAAATAAAAGTAATTTAATTAAACATAAACGATGTCATAGTGGCGAAAAACCTTATTCATGTGGTATTTGTGAAAAATCGTTTTCGCAGCAAGGTGGTTTAATTACACATAATCGACTTCATACCGGAGAAAAACCTTTTGGATGCAGTTTTTGTGATAGAGCATTCACTACAAAAGCAAGTTTAGAAAAACATACTCGAACGCACACTGGAGAACGACCCTTTTCATGTGATATTTGTGAAAAAACATTTACTCAAAAAAATACTTTGGTCCTTCATAAACTAGGTCATACCGGAGAGAAACCTTTATCATGTGAATTTTGTGATAAAAAGTTTACTCAGCATAGCAATTTACTTAGTCACAAAAGAGTTCATACGGGAGAGAGACCTTATTTATGCGATATTTGTTTTAAAACGTTTGCTCATAAAAGTGGCTTAGTAAATCATCAGCTTGTTCATACCGGAGAAAGACCATTTACTTGTGATATTTGTTTCAAAACATTTAATCGAAAAAATATTTTAGACCAACATAAACAACTTCACACTGGAGAGAAACCTTTTTCATGTAATGTTTGTGAAAAAAAATTTGCACAGCATTCTCATTTACTTTCTCACAGTCGACTTCACACGGGAGAGAAGCCGTTTGCTTGTGATGTTTGCGATAAAAAATTTTCGCACCCTAGCAATTTAGTTTGTCACAAACGAATTCATACCGGGGAGAAACCTTTTGCGTGTCATTTTTGCGGTAAAACGTTTACTTTGAAAGGAAGTTTACTTAAACATATTCAGATTCATACCGGTGAAAAATCATCAAAATCGGGTGGAATTTCATCTTCTGTGAAGTCTGAATCATGTGATACTCCGTCTCCTGTTACGGTTGCTGAGTCTATTAATGATACAACGTAA
- Protein Sequence
- MSNYSFIDVNNTELIKEENIKQEEELTEDESFKIEEVFIKKEIDDEILHEPYSCVDVVLKESQSSFSNDDGILQEPHSFSKTEILQGPHSCEICNQTFITIENLTEHRQIHNEKKSLPCDGCDKSFPDYSQLLRHQRIHTGEKPFSCDHCDKTFSQLAHLASHKRLHTGEKPFSCDKCDKKFSNKSNLIKHNRIHTGEQTHSFSCDVCSKTFTQQSHLICHQRIHTGEKPYSCDECDKSFNRPVNLLEHKRHHTGDKFSCTVCGKTFIRRYDLAEHSRIHSGDKPFSCDECDKKFTNKSNLIKHKRCHSGEKPYSCGICEKSFSQQGGLITHNRLHTGEKPFGCSFCDRAFTTKASLEKHTRTHTGERPFSCDICEKTFTQKNTLVLHKLGHTGEKPLSCEFCDKKFTQHSNLLSHKRVHTGERPYLCDICFKTFAHKSGLVNHQLVHTGERPFTCDICFKTFNRKNILDQHKQLHTGEKPFSCNVCEKKFAQHSHLLSHSRLHTGEKPFACDVCDKKFSHPSNLVCHKRIHTGEKPFACHFCGKTFTLKGSLLKHIQIHTGEKSSKSGGISSSVKSESCDTPSPVTVAESINDTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -