Ccar017364.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:18610127-18612688[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.087 1.9 9.5 0.8 7 23 93 109 93 109 0.95 2 16 5.8e-06 0.00012 22.7 0.3 1 23 115 138 115 138 0.96 3 16 4.5e-07 9.8e-06 26.1 1.4 1 23 144 166 144 166 0.98 4 16 1.1e-05 0.00023 21.8 2.4 1 23 172 194 172 194 0.98 5 16 0.00016 0.0035 18.1 4.2 1 23 304 326 304 326 0.98 6 16 3.4e-07 7.4e-06 26.5 0.4 1 23 351 374 351 374 0.96 7 16 1.4e-05 0.0003 21.4 1.5 2 23 381 402 380 402 0.97 8 16 8.5e-05 0.0018 19.0 0.8 1 23 408 430 408 430 0.98 9 16 0.0038 0.083 13.8 0.6 1 23 449 471 449 471 0.96 10 16 0.00026 0.0057 17.4 3.0 1 23 477 499 477 499 0.98 11 16 6.1e-06 0.00013 22.6 0.5 1 23 505 527 505 527 0.99 12 16 6.3e-06 0.00014 22.5 4.0 1 23 533 555 533 555 0.98 13 16 3e-05 0.00065 20.4 2.5 1 23 715 737 715 737 0.98 14 16 3.4e-07 7.4e-06 26.5 0.4 1 23 762 785 762 785 0.96 15 16 2.6e-05 0.00056 20.6 0.9 2 23 792 813 791 813 0.97 16 16 1.1e-07 2.5e-06 28.0 1.4 1 23 819 841 819 841 0.98
Sequence Information
- Coding Sequence
- ATGGCAAAAAATTCATTTAAAGATGAAAATGAAATTGATCCTTTATTTATTAATGAAAATAATCAACTTGAAAATGATTTAAAAAAACAAATATTGAACGTAAATGTTAAAATGGAAGAAAATCATTCAATGCCACTTGTTTTAATTAAAGAAGAAATCGACCTGGAAGATGTTATAATTAAAGAAGAAAATGTTGTCATGGAACACATTAATGAAAATGAACAGTTGGTAACCGATAAATTGGAAGAATTTAACATAGAAAATGAAAAACTTAGTGATAAAAAATTTCCTTTCAAAAGTAATTTAAATAAACATAAAAGACTTCACCTAGGAGAAAAAAGATTTTCATGTGATGTTTGTGATAAAAAATTTATTCAGCAATCAAGTTTGAATTTACATATCAAAGCAATTCATTTTGACGAAAAGCCATTTTCTTGTGAAATATGTGATAAACGATTTATAACACGTCAAAATTTAATAACACATCAACGAACTCATACTAGAGAAAAACCATTTTCATGTGAAATTTGTGGTAATAAGTTTTCTCATCAGAGTAGTTTAGTGAGACATAAAAGAATTCACATTCGAGAGAATCTTGCCCATGAAGTATTTGAAGAAAAAATCGATTTGATTAAAGAAGAAATAATTGACGTTGATGAATCATCTGTACTTGACTTCGATCATGAAAAACTTGAAGAAAATTTGATGAAAAATGAAGTTATTGCAGTCGAGAATGAACAAATTAATGAAGAAATAAATTTGGATCAAATATTGATTAAGGAGGAAATATTAGCCGAAAATAATATAGTGCAACATGAATTAATTTCAGATCAAGATGAAACCGATAAATTGGACCATAAATTAAAATTGGAAACTGAAAATGCTTTAAAATCTCAACAAAACAAACCGTATTCATGTGATTTTTGTGATAAGAGATTTAAACATCGAGTAAATTTATCAATTCATAAACGATTACATTCAGGAAAACGACCTTTTTCACGTAATTTATGCAATAAAGTTAATAAACGTCTTCATACTGGAGAAAAACCATTTTCTTGCGAGGTTTGTGATAAAAAATTTACTCAGCAATCAAATTTGAATGTACATATCAAAGCAATTCATTTTGGCGAAAAGCCATTATCTTGTGAAATATGTGATAAGCGATTTATGAAGCGTCAAAATTTAATAACACACCAACGAACTCATACCGGAGAAAAACCATATTCATGTGAAATTTGTGGTAATAAGTTTTCTCAGCTAGGTACTTTAAGTAGGCACAAACGTCTTCATACTTTTAAAAGTAATTTAAATCAATTTAAAGGATTTCACCTAGGAGAAAAACCTTTTTCTTGTGAAATTTGTAAAAATAAATTTACTCGGAAAGTAACTTTAGATGCACATAAAGCAATTCACAGGGGAGAAAGAAATTATTCATGTGATATGTGTGGTAAACGATATTTTCATTATGATAGTTTAACTGTTCATAAACGGATTCACGGGGTGGAAAGATCATATCCTTGTGAAATTTGTGATAAGAGATTTATTAGACGTCAAGATGTAATAACACATCAACGAACTCATACGGGAGAAAAACCATTTTCATGTGAAATTTGCCACAAAAAATTTACTCAACAGAGTAGTTTAGTGAGACATAAAAAAATTCACATCCAAGATAATTTAGCGCAACATAAACTCATTTCATATCAAGATGAAATCGATAAATTGCAACATAAAAGCTGTAAATTTGAAGAAAACTTGACGGAAAACGAAATTAATGCAGTAGAAAATGTACAAATTAAAGAAGAAATCAATTTGGATCAAATATTGATTAAGGAGGAAATATTAGAAGGAAATAATATAGTGCAACATGAACTCATTTCAGATCAAGATGAAATCGATAAATTGGAACATAAAAGTAGTAAATTTGAAGAAAACTTGACGGAAAATGAAATTAATGCAGTAGAAAATGTACAAATTAAAGAAGAAATCAATTTGGATCAAATATTGATTGAGGAGGTAATATTAGAAGAAAATAATATAGTGCAACATGAATTAATTTCAGATCAAAATGAAACCGTTAAATTGGACCATAAATTAAAATTAGAAGCTAAAAATGCTTTAAAATCTCAACAAAACAAACCATATTCATGTGAGTTTTGTGATAAGAGATTTAAACGTCGAGTAAATTTATCAATTCATAAACGATTACATTCTGGAAAACGACCTTTTTCTCGTAATTTATGCAATAAAGTAAATAAACGTCTTCATACTGGAGAAAAACCATTTTCTTGCGAGGTTTGTGATAAAAAATTTACTCAGCAATCAAATTTGAATGTACATATTAAAGCAATTCATTTTGGTGAAAAGCCATTATCTTGTGAAATATGTGATAAGCGATTTATGAAACGTCAAAATTTAATAACACATCAACGAATTCATACGGGAGAAAAACCATTTACATGTGATATTTGTGGTAAAAAATTTACTCAACAGAGTAGTTTAGTGAGACATAAAAGAATTCATACTGGAGAAAACCATTTTCTTGTAAGTGAAATCAGTTAG
- Protein Sequence
- MAKNSFKDENEIDPLFINENNQLENDLKKQILNVNVKMEENHSMPLVLIKEEIDLEDVIIKEENVVMEHINENEQLVTDKLEEFNIENEKLSDKKFPFKSNLNKHKRLHLGEKRFSCDVCDKKFIQQSSLNLHIKAIHFDEKPFSCEICDKRFITRQNLITHQRTHTREKPFSCEICGNKFSHQSSLVRHKRIHIRENLAHEVFEEKIDLIKEEIIDVDESSVLDFDHEKLEENLMKNEVIAVENEQINEEINLDQILIKEEILAENNIVQHELISDQDETDKLDHKLKLETENALKSQQNKPYSCDFCDKRFKHRVNLSIHKRLHSGKRPFSRNLCNKVNKRLHTGEKPFSCEVCDKKFTQQSNLNVHIKAIHFGEKPLSCEICDKRFMKRQNLITHQRTHTGEKPYSCEICGNKFSQLGTLSRHKRLHTFKSNLNQFKGFHLGEKPFSCEICKNKFTRKVTLDAHKAIHRGERNYSCDMCGKRYFHYDSLTVHKRIHGVERSYPCEICDKRFIRRQDVITHQRTHTGEKPFSCEICHKKFTQQSSLVRHKKIHIQDNLAQHKLISYQDEIDKLQHKSCKFEENLTENEINAVENVQIKEEINLDQILIKEEILEGNNIVQHELISDQDEIDKLEHKSSKFEENLTENEINAVENVQIKEEINLDQILIEEVILEENNIVQHELISDQNETVKLDHKLKLEAKNALKSQQNKPYSCEFCDKRFKRRVNLSIHKRLHSGKRPFSRNLCNKVNKRLHTGEKPFSCEVCDKKFTQQSNLNVHIKAIHFGEKPLSCEICDKRFMKRQNLITHQRIHTGEKPFTCDICGKKFTQQSSLVRHKRIHTGENHFLVSEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -