Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:5668746-5670682[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0011 0.024 15.5 2.0 1 23 5 27 5 27 0.99

2 18 5.9e-07 1.3e-05 25.8 1.0 1 23 33 56 33 56 0.97

3 18 1.8e-06 3.9e-05 24.2 1.1 1 23 65 87 65 87 0.98

4 18 3.8e-06 8.2e-05 23.2 5.3 1 23 93 115 93 115 0.99

5 18 4.2e-05 0.0009 19.9 0.3 1 23 121 143 121 143 0.97

6 18 2.3e-05 0.0005 20.8 2.8 1 23 149 171 149 171 0.98

7 18 0.00088 0.019 15.8 2.8 1 23 182 204 182 204 0.99

8 18 0.00036 0.0077 17.0 0.4 1 23 210 232 210 232 0.98

9 18 0.00037 0.0081 17.0 0.9 1 23 238 261 238 261 0.97

10 18 0.0087 0.19 12.6 4.0 1 23 294 316 294 316 0.98

11 18 0.00015 0.0033 18.2 1.5 1 23 322 345 322 345 0.96

12 18 3.8e-05 0.00082 20.1 0.2 1 23 351 373 351 373 0.98

13 18 0.0023 0.051 14.4 1.4 1 23 379 401 379 401 0.98

14 18 3.3e-05 0.00072 20.3 0.3 1 23 406 428 406 428 0.97

15 18 5.3e-07 1.1e-05 25.9 2.3 1 23 434 456 434 456 0.98

16 18 4.4e-06 9.6e-05 23.0 2.1 1 23 467 489 467 489 0.98

17 18 2.4e-05 0.00051 20.7 0.4 1 23 495 517 495 517 0.98

18 18 0.00045 0.0098 16.7 1.7 1 23 523 546 523 546 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0011	0.024	15.5	2.0	1	23	5	27	5	27	0.99
2	18	5.9e-07	1.3e-05	25.8	1.0	1	23	33	56	33	56	0.97
3	18	1.8e-06	3.9e-05	24.2	1.1	1	23	65	87	65	87	0.98
4	18	3.8e-06	8.2e-05	23.2	5.3	1	23	93	115	93	115	0.99
5	18	4.2e-05	0.0009	19.9	0.3	1	23	121	143	121	143	0.97
6	18	2.3e-05	0.0005	20.8	2.8	1	23	149	171	149	171	0.98
7	18	0.00088	0.019	15.8	2.8	1	23	182	204	182	204	0.99
8	18	0.00036	0.0077	17.0	0.4	1	23	210	232	210	232	0.98
9	18	0.00037	0.0081	17.0	0.9	1	23	238	261	238	261	0.97
10	18	0.0087	0.19	12.6	4.0	1	23	294	316	294	316	0.98
11	18	0.00015	0.0033	18.2	1.5	1	23	322	345	322	345	0.96
12	18	3.8e-05	0.00082	20.1	0.2	1	23	351	373	351	373	0.98
13	18	0.0023	0.051	14.4	1.4	1	23	379	401	379	401	0.98
14	18	3.3e-05	0.00072	20.3	0.3	1	23	406	428	406	428	0.97
15	18	5.3e-07	1.1e-05	25.9	2.3	1	23	434	456	434	456	0.98
16	18	4.4e-06	9.6e-05	23.0	2.1	1	23	467	489	467	489	0.98
17	18	2.4e-05	0.00051	20.7	0.4	1	23	495	517	495	517	0.98
18	18	0.00045	0.0098	16.7	1.7	1	23	523	546	523	546	0.97

Sequence Information

Coding Sequence: ATGGAAAAAATCTATAAGTGTAAATATTGTGATTTAGCATTTACATCGAAAATATTCCGAGCTAAACATACACGAATTCATACTTTAGAAAAACCGTTCGTATGTGATATTTGTGACAAAAAGTTTACTCAAAAAAACAATTTAAATGCACATAAGAGAAATGTACATACCGATCCCGAAACAGCTCCAGTTTTTTCATGTGATGTTTGTGATAAATCATTTAAACGGCCATATCTTTTAAATGAACATAAACGACTCCATACTGGAGAAAAACCGTTTACATGTGAAATTTGTGATAAAAAATTTACACATCAATCCTCTTATTCAAAACATCAACAAACACATACTGGGGAAACCCCGTACGCTTGCGATGTTTGTAATAAAACATTTACGGTACGCAAAGCCTTAGAACAACATAGGCTCATTCATACGGGGGAGAAACCGTATTCATGTGATTTTTGTGGTAAATTGTTCAACCATCAAGGGAATTTGAATCAACATAAACGAATTCATACCGAAAATGGGACACCAATGGAAAGATCATTTAAATGTGATTTTTGCGATAAGTCATTTTTATATAAAATTAATTTAACTTATCATAGACGAATTCATACCGGAGAAAAACCATACACATGCGAGGTTTGTAATACATCGTTTGCTAGAAATAGTATTTTAGTTCAACATAAACGTATTCATACGGGCGAAAAACCATTTTCATGTGATATATGTCAACAAAAATTTGCTCGACCAAACGAATTATACAGTCATAAAAAACGAATTCATGGCGTTGAACATATATCAAACAAAAATAAACCTATTCAAATTGAAGAAAAACCACCGAAAACAGAAAAACCGCCGACGATTACGGTTGAAAAAATTTATAAATGTAAATATTGTAATTTAACATTTTCATCAAAACTATTTCGAGCGAAACATAAACGAATTCATACGCAAGAAAAACCGTTCTCATGTGATGTTTGTGATAAAAAATTTACATTTAAAAATAGTTTGGTTGCACATAAAAAATACGTGCATCTTGCTGAAAAAAATTTCTCATGTGATGTTTGTGACAAAGCATTTACACGACCAGAACGTTTAGTTATACATAAACGACTTCATACAGGCGAACAACCTTATTCATGTGAAATTTGTGATCAAAAATTTGCTAGTCCATCTGCTTATTCCTGTCACCAACAAACCCACACCGGAAAACCATATATTTGTGATGTTTGTAATAAAACTTTTACTGTACGAAAAGCTTTAGAACAACATCGATTAATTCACACGGGGGAAAAACCATTTTCATGCGATGTTTGTGGGAAAACGTTTAATCATCAAGGGAATTTAAATCAACATAAACGAATTCATACCGAAGATGGAACTGAAAGAGAAAAATCTTTTAAATGTAATGTTTGTGATAAGAGTTTCGCGTATAAAACTAATTTAACTTATCATAGTCGAATTCATACCGGAGAAAAACCATATACGTGTGATATTTGTGATAAATCTTTTGCTAGAAATAGTATTTTAGTTCAACATAAACGTATACACACGGGGGAAAAACCATTTTCGTGTGATATTTGTAATCAGAAATTTTCTCGACTAAATGATGTTAATAAACATAAAAAACGAATTCATTTAATCGATTCTTCAGGTAAAGATGAAACCATTCAAATTGAACAAGTTTTACAAAGGGAAATGACGATTAAAAATGAAAATGGAGATATTGAAGAAGTTTTAGAAGAATCCAATACTTCTGTTAGTTCTGTTGCAGTTGGACAAACATTTTCTGATCAAAGTAATTTAACAAATTAA
Protein Sequence: MEKIYKCKYCDLAFTSKIFRAKHTRIHTLEKPFVCDICDKKFTQKNNLNAHKRNVHTDPETAPVFSCDVCDKSFKRPYLLNEHKRLHTGEKPFTCEICDKKFTHQSSYSKHQQTHTGETPYACDVCNKTFTVRKALEQHRLIHTGEKPYSCDFCGKLFNHQGNLNQHKRIHTENGTPMERSFKCDFCDKSFLYKINLTYHRRIHTGEKPYTCEVCNTSFARNSILVQHKRIHTGEKPFSCDICQQKFARPNELYSHKKRIHGVEHISNKNKPIQIEEKPPKTEKPPTITVEKIYKCKYCNLTFSSKLFRAKHKRIHTQEKPFSCDVCDKKFTFKNSLVAHKKYVHLAEKNFSCDVCDKAFTRPERLVIHKRLHTGEQPYSCEICDQKFASPSAYSCHQQTHTGKPYICDVCNKTFTVRKALEQHRLIHTGEKPFSCDVCGKTFNHQGNLNQHKRIHTEDGTEREKSFKCNVCDKSFAYKTNLTYHSRIHTGEKPYTCDICDKSFARNSILVQHKRIHTGEKPFSCDICNQKFSRLNDVNKHKKRIHLIDSSGKDETIQIEQVLQREMTIKNENGDIEEVLEESNTSVSSVAVGQTFSDQSNLTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -