Ccar012091.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:82609076-82611403[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00013 0.0028 18.4 5.2 1 23 45 67 45 67 0.98 2 17 4e-05 0.00086 20.0 0.7 1 23 73 95 73 95 0.95 3 17 9.9e-05 0.0021 18.8 5.5 1 23 101 123 101 123 0.99 4 17 2e-07 4.4e-06 27.2 0.6 1 23 129 151 129 151 0.99 5 17 2.4e-05 0.00052 20.7 2.8 1 23 157 179 157 179 0.98 6 17 1.6e-05 0.00035 21.2 1.8 1 23 422 445 422 445 0.97 7 17 4.2e-05 0.00091 19.9 0.2 1 23 451 473 451 473 0.97 8 17 7.6e-07 1.6e-05 25.4 2.1 1 23 479 501 479 501 0.98 9 17 0.00015 0.0033 18.2 1.2 1 23 507 529 507 529 0.97 10 17 0.0003 0.0065 17.3 0.5 1 23 535 557 535 557 0.97 11 17 9.1e-05 0.002 18.9 0.2 1 23 563 585 563 585 0.94 12 17 0.00077 0.017 16.0 1.4 3 23 593 613 591 613 0.96 13 17 3.6e-06 7.9e-05 23.3 2.7 1 23 619 641 619 641 0.98 14 17 1.6e-05 0.00034 21.3 1.9 1 23 647 669 647 669 0.98 15 17 6.5e-05 0.0014 19.3 0.2 1 23 675 698 675 698 0.96 16 17 3.3e-06 7.2e-05 23.4 1.7 1 23 704 726 704 726 0.98 17 17 0.00082 0.018 15.9 5.0 1 23 735 757 735 757 0.97
Sequence Information
- Coding Sequence
- ATGTCTAGCTATTCATTTAATGATATAAATAATACGCTACTCAAAGATGAAAACTTAAAAAATCTACACCAATTAAATCCAGAATTTCTAATTAAGAATGAAATATTAGAAGAAAAATCAAAAGAAAAACCTTTTTCATGTGATATTTGTGATAAAACATTTAATCAATTTCACCATTTAGTTTCTCATAAACGAATTCATACCGGTGAAAAGAGTTTTTTATGTGATTTTTGTGGTAAAGCATTTCGATATCAAAATAATTTAGTGGAACATAAACGAATTCATACAGGAGAAAAACCATATACGTGCGATGTCTGTCATAAACCATTTACCACTCATAACGATTTAGTTAAACATAAACGAAAACATACTGGCGAGAAACCTTACACATGTGATGTTTGTGCGAAATCATTCACACAAAAAGGTAATTTAATTAGGCATCAACGAATTCATACCGGAGAGAGACCATTTTCCTGTAATATATGCGAGAAATCATTCTCAACACAACATGTTTTAGTCAGACATAGACGGCTTCATACTGGAGAAGAACATGTTCAAAGTGAAGTTCGTGATAAAACATTCGTTAGTCATATTAATTTACTAGAAAATCAACGGCTTCAATCTGGAGTGGATTTACGTTTTCCATATGATTTACCATTTAACCAGAAACAACATTTAATTGAAAATAGACAAATTCCGACTGGAATAAATTCCTTTGCATATATTGGTAGTACGAGCACTAGCGGGGAAAAGTCTGAGACTACGCAAGTTGAATTACCAAGTTCTTACATTTCAGTTCCTGAAAATTCACGACCCACTTTTAGCTCATTTATTCCACCGCCTGATAATTCACATCCTTCAGTTGATACCACTATCCATTCTGTTGAAAGCGTAAAAAGGGAGCAACAAATAAATACAGAATCTATAATCAAAGATGAAAATATTAAAATAGAGCAACAATTTAATTCAGATGTTAAAATTAAAGAGGAAGTTTTAAAAGAAAATGTTGTACCTGAACATAAAGAAAGTCATACTAAGAACAGATCTTTTTCGTATGATGTTTTCGATAGTTGTAGCGAAGGGGATATGGATCCAGGTCCATCAAGTCCATTCATTGCATCTCCCGATAATTCTCATGCCTCTGCCCAATCTTTCGAAGATACAAAAACTGATCAAAAATTCGAATTAACAGTTAAGGATGAAGATATTACAATTGAAGATAATTTTGAAAGTGAGGGACAAAAAGATGTCGAAGAAAAATCTTACTCCTGTGATGTGTGTGAGAAAACGTTTATCAAACGTAGAAATTTACGTAGGCATAAACGACTTATTCATAATAAAAATAAAACTTTTCCATGTGATGATTGCGATAAAGTATTTAAAAAAGAAAGAGATTTGATTATTCATGAGCGGGATCATACTGGAGAAACATGTTTTTCATGCGCTGAATGTGGGAAAACATTTACGAATACAAAAAATTTACGTAGACATCAAAAACTGCATAGAGGAGAAAAAAGATTTGCATGTGATGTTTGCGATAGAGCATTTACATTCCATAGGAATTTGATTGAACATAAACGAATTCATACTGGAGATAAACCTTTTGCTTGTGATATTTGTGAAAAAACATTTACGATCAATCGAAGTTTAGTCGAGCATAAACGAATGCATGCTGGAGACAGGCCATTCGCTTGTGATCTTTGTGATAAAGCATTTACCAGTAATAGAAGTTTAACTGCACATAAAGGTATTCATACTGGCAAAAAACCTCACTTATGTGAAGAATGTGGACGAGGATTTTCCAAAATGCTCGATCTACAACGCCATAAACGAATACATACCGGGGAAAGACCATTTACATGCGATTATTGTGGTAAGACCTTTATAAATCGTTGCAATTTAGTAGAACATAGACGAATTCATACGGGTGAGAAACCATTTACATGTACAGTTTGTTCGAAATCATTTACACAACAGCGAAGTTTAAATATACACAGGGTAACACATACCAAGGAGAGAGCTTTTGCATGTACTGTTTGTGATAAAACATTTGGTTATAAATCCAGTTTAGTGGAACATGAACGAATTATACATAATGGTGAAAAACGTTTTACATGTGATATTTGTAATAAAAAATTCCCTAGACAAAATTATTTGGTTAAACATCGAAGAATACATACTCGAGAACCAGAAATACAGTTACATTCATGCGATATTTGTTTTAAACAATTTTCACGACCAAATCATTTGGCTAATCATAAGAAATCTCACATTGAAAAAGCTGTAAAAACATTTTTGAAAAAAGGTGTAAATATTTTTTCGAAATAA
- Protein Sequence
- MSSYSFNDINNTLLKDENLKNLHQLNPEFLIKNEILEEKSKEKPFSCDICDKTFNQFHHLVSHKRIHTGEKSFLCDFCGKAFRYQNNLVEHKRIHTGEKPYTCDVCHKPFTTHNDLVKHKRKHTGEKPYTCDVCAKSFTQKGNLIRHQRIHTGERPFSCNICEKSFSTQHVLVRHRRLHTGEEHVQSEVRDKTFVSHINLLENQRLQSGVDLRFPYDLPFNQKQHLIENRQIPTGINSFAYIGSTSTSGEKSETTQVELPSSYISVPENSRPTFSSFIPPPDNSHPSVDTTIHSVESVKREQQINTESIIKDENIKIEQQFNSDVKIKEEVLKENVVPEHKESHTKNRSFSYDVFDSCSEGDMDPGPSSPFIASPDNSHASAQSFEDTKTDQKFELTVKDEDITIEDNFESEGQKDVEEKSYSCDVCEKTFIKRRNLRRHKRLIHNKNKTFPCDDCDKVFKKERDLIIHERDHTGETCFSCAECGKTFTNTKNLRRHQKLHRGEKRFACDVCDRAFTFHRNLIEHKRIHTGDKPFACDICEKTFTINRSLVEHKRMHAGDRPFACDLCDKAFTSNRSLTAHKGIHTGKKPHLCEECGRGFSKMLDLQRHKRIHTGERPFTCDYCGKTFINRCNLVEHRRIHTGEKPFTCTVCSKSFTQQRSLNIHRVTHTKERAFACTVCDKTFGYKSSLVEHERIIHNGEKRFTCDICNKKFPRQNYLVKHRRIHTREPEIQLHSCDICFKQFSRPNHLANHKKSHIEKAVKTFLKKGVNIFSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -