Ccar001749.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997759.1:15605284-15607722[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 6.8e-06 0.00015 22.4 2.0 1 23 89 111 89 111 0.99
2 18 9.4e-08 2e-06 28.3 0.7 1 23 116 138 116 138 0.98
3 18 0.00034 0.0074 17.1 4.2 1 23 144 166 144 166 0.98
4 18 4.8e-05 0.001 19.7 2.1 1 23 172 194 172 194 0.98
5 18 9.1e-05 0.002 18.9 0.7 1 19 200 218 200 219 0.97
6 18 2.2e-05 0.00048 20.8 2.5 1 23 228 250 228 250 0.98
7 18 1.8e-06 3.9e-05 24.2 1.5 1 23 256 278 256 278 0.99
8 18 2.8e-05 0.00061 20.5 2.8 1 23 284 306 284 306 0.98
9 18 1.7e-05 0.00038 21.1 3.9 1 23 312 334 312 334 0.99
10 18 4.4e-05 0.00094 19.9 0.8 1 23 526 548 526 548 0.97
11 18 5.5e-05 0.0012 19.6 0.8 2 23 554 575 553 575 0.97
12 18 1.7e-06 3.7e-05 24.3 4.8 1 23 581 603 581 603 0.98
13 18 5.2e-05 0.0011 19.6 7.8 1 23 609 631 609 631 0.97
14 18 6.5e-06 0.00014 22.5 4.2 1 23 637 659 637 659 0.98
15 18 5.6e-06 0.00012 22.7 0.6 1 23 665 687 665 687 0.96
16 18 0.12 2.5 9.1 1.0 1 21 694 714 694 715 0.92
17 18 0.0022 0.048 14.5 1.8 1 23 729 751 729 751 0.98
18 18 0.0085 0.18 12.7 0.4 1 23 768 790 768 790 0.97

Sequence Information

Coding Sequence
ATGGCAAATAATTCATTACATAAACTAAATACCGAATTTGTTAAATGTGAAAGTTTAGACGACAGTGTTACAATGGAAGAAAATGGTAAAATAAAAAATGAAATACTAGAAGACCATACAAATACTACAATGGAAAATGTTCGAATTAAAAATGAAATACAAGAACAAAGTGTAAGTGATTGTGATCCGATAGAACATAAACGAATTGAAAATGAAGTACTTGAAGTGAACGGTGCTAGTACAAAACAAAAAGTAATTCGTGAATATAAATGTGAATTTTGTAATAAAATATTTGGTAACTCAAGTAATTTGAGTAAACACCGAAAGATTCATACTGGAGAAAGATACGTATGTGAAGTATGTAAGAAAACATTCAGTACAGCAAGTAATTTAGCGAAACATAGACGAATTCACACTGGAGAAAGACCATTTGTATGCGAGATATGTAAAAAAACATTTAACAGGCAAGATTGTTATGTTGAACATAAACGGAGACATACCGGAGAAAAACCGTATTCATGTGATGTTTGTGAAAAACGATTTATCCAACAAAATCATTTAGTCCAACATAAAAGGATTCACACTGGAGTGAAACCATTTTCATGTGATATATGTAATAAAACATTTAATCGAAAAAGTTATCTAATTGAGCACAATTGGATTCACACGGGAGAAAAATCATTTTCATGTGATATTTGTAAAAAAAAATTTGCTCACCAAGACAGTTTAATTAAACATAACAGGATTCATACTGGAGAAAAACCATATTCTTGTAGTTTTTGTGATAAACGATTTATTCAACCAAGCGATTTAGTGAAACATAAAAGGACACACACAGGAGAAAAACCATATCCGTGTGATTTCTGTGAAAAACGATTCAATCAACAAAATCATTTGATAAACCATCGAAGGATTCATACCGGAGAAAAACCTTATTCATGTGAATTATGTAATAAAAAATTTAGTACACGAAGTAGTTACGTTAAACATAAACGTACTCACAGCGGTGAAAAATTCTCATGTGATATTCGAAAGAAAATATTTAAGAAACAAGTTCAAAATAAACAGGTTCACATTGAAGAAGAAAAACAATTTACTGATCTAAGCACATCTAAAAAAGTTGAAGAAAAACCATTTTCTAGTAATATTTATGAAAATAATTATAGACAAGATAATTTAATTCAAAATCAACTGTTTCATAACGGAGAAAAACAATTTTCAAATGGCTATTATGAAAATACATTTAGACAAGATAGTTTAGTACAAAATAGGGCGATTTACACCGGAGGAAATCCATTTTCATGGGATGTTTATGAAAAAACAAGGCAAGATCAACAAATGCAGATTCATAAACCATTTTCATGTGATTTTGAGAAAACGTTTAATAGAGAAGATACATTAGTTCAAAATAAACATACTGGAGAAAAACCATTTTCATGTGATTTTGAAAATACATTTAATACGTCAGTTCCTAATCAAATTCCAATTGGAGAAAATCCAATTTCTTGTGATGTTTCTGGAAAAACATTGACTGATCGAAGTATAGTTAAAAAGATTCCAAGTGGAAGAAAACCATATTCATGTGATATTTGTGATAAAATATTTAGTTCACAAAGTAAAGTAATTAAACACAAACAACTGCATGGTAAGAAACATGTTACTTGTTCAATTTGTAAAAAAACATTTAAATTACAAAGTGATTTAGTTGAACACAAACGGATTCACACTGAAAAGAAGCCATTTTCATGTGGAATTTGTAAGAAATCATTTAAAAAGAAAGATCATTTAAATAAACATCAAAGAATTCACACTGGAGAAAAACCATTTTCATGTGATACTTGTAATAAAACATTTACACATAAAAGTCATTTAAAAACACATCAATTCGTTCACACTGGAGAAAAATCATTTTCGTGTGATATTTGTAAAAAAAGATTTATCAATTCAAGCCATTTAAATCGACATAAAAAGATTCATACTGGAGAAAAACCATTTGCGTGTGATATATGTGGAAAATCGTCGAGAAACAAAAGTGATTTAAGAAAACATAAATTGATTCATACTAGAGAAAAAAAATTATACGCATGTGATCGTTGTGATGAAACATTTGAGGATCATAGACGTTTAACAAGCCATAACAAACGAAGAGCCAAAGATCCTTTGGACAAGGATCGAAAAGAACCATTTTCATGTGGTAATTGTGGTTTTAGAACATGTGATTGGGACAGTTTAATTAAACATAATCAAACGCACAATGAACAAAATACTAAAGACTCTATCGACCCAGATCAAGAAGAACTATTTGCATGTGTTATTTGTGGTAAGAAATCATCGGATCGAGTCAGTTTTGTTCAACATAATCAGACTCATATTGGAGAAATTATTACCAAACCTTTGATTGAACAAAAACAGATTCGCGTAATTCCAAGCGCGGATTAG
Protein Sequence
MANNSLHKLNTEFVKCESLDDSVTMEENGKIKNEILEDHTNTTMENVRIKNEIQEQSVSDCDPIEHKRIENEVLEVNGASTKQKVIREYKCEFCNKIFGNSSNLSKHRKIHTGERYVCEVCKKTFSTASNLAKHRRIHTGERPFVCEICKKTFNRQDCYVEHKRRHTGEKPYSCDVCEKRFIQQNHLVQHKRIHTGVKPFSCDICNKTFNRKSYLIEHNWIHTGEKSFSCDICKKKFAHQDSLIKHNRIHTGEKPYSCSFCDKRFIQPSDLVKHKRTHTGEKPYPCDFCEKRFNQQNHLINHRRIHTGEKPYSCELCNKKFSTRSSYVKHKRTHSGEKFSCDIRKKIFKKQVQNKQVHIEEEKQFTDLSTSKKVEEKPFSSNIYENNYRQDNLIQNQLFHNGEKQFSNGYYENTFRQDSLVQNRAIYTGGNPFSWDVYEKTRQDQQMQIHKPFSCDFEKTFNREDTLVQNKHTGEKPFSCDFENTFNTSVPNQIPIGENPISCDVSGKTLTDRSIVKKIPSGRKPYSCDICDKIFSSQSKVIKHKQLHGKKHVTCSICKKTFKLQSDLVEHKRIHTEKKPFSCGICKKSFKKKDHLNKHQRIHTGEKPFSCDTCNKTFTHKSHLKTHQFVHTGEKSFSCDICKKRFINSSHLNRHKKIHTGEKPFACDICGKSSRNKSDLRKHKLIHTREKKLYACDRCDETFEDHRRLTSHNKRRAKDPLDKDRKEPFSCGNCGFRTCDWDSLIKHNQTHNEQNTKDSIDPDQEELFACVICGKKSSDRVSFVQHNQTHIGEIITKPLIEQKQIRVIPSAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-