Ccar023247.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997754.1:132007295-132010343[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.7e-06 8e-05 23.2 0.8 2 23 241 262 240 262 0.97
2 16 5.6e-06 0.00012 22.7 1.7 1 23 268 290 268 290 0.97
3 16 1.1e-05 0.00023 21.8 2.1 1 23 296 318 296 318 0.98
4 16 0.0015 0.033 15.0 2.0 1 20 324 343 324 346 0.92
5 16 5.8e-07 1.2e-05 25.8 2.1 1 23 352 374 352 374 0.98
6 16 0.00038 0.0082 16.9 3.8 1 23 380 402 380 402 0.98
7 16 0.0014 0.029 15.2 1.1 1 20 408 427 408 430 0.91
8 16 9.2e-07 2e-05 25.2 0.2 1 23 436 458 436 458 0.98
9 16 8.7e-05 0.0019 18.9 2.8 1 23 464 486 464 486 0.98
10 16 0.00011 0.0024 18.6 0.4 1 20 492 511 492 514 0.92
11 16 0.00011 0.0025 18.6 1.8 1 23 520 542 520 542 0.98
12 16 1.2e-06 2.5e-05 24.8 0.4 1 23 548 570 548 570 0.98
13 16 6.1e-06 0.00013 22.6 0.9 1 23 576 598 576 598 0.98
14 16 3.4e-06 7.3e-05 23.4 1.1 1 23 604 626 604 626 0.98
15 16 1.9e-07 4.1e-06 27.3 1.9 1 23 632 654 632 654 0.99
16 16 4.2e-06 9e-05 23.1 1.4 1 23 660 682 660 682 0.99

Sequence Information

Coding Sequence
ATGGAAAATTATATCGAGTACATTGCTATGGGAAAAGTATCAAAAGTGTGTTTGAAACCAGGTTGTGCTCCAAGTAAATTTGAATGCCAAGAAGATGGACGAAAACGACCATGCAGCAGTACAGAACAGTCGGATACATTAAAAGAAAAAAGAATGATGGTGATGGCAGAGGGTCTGATTAAACCAGAAGGAAATGGTACACCAAGTTCATCTCTCAAAGATACTTCTGATAAAAGTTCGAATGGAGCAAATGTGCCAGAAATTTTTTGTGAAGTGAAATCAAGAGACGAGACATTATCACCTTTGAAACCGTCACTAATATCTGTTGCCACATCCCCATCAAATGCTGAAAATATTTTAAAATCAAGTCCTACTGTGTCCGACCTAAGAAAAATTAATGGAAATATATTGATTGAAGAAAAGCACTCTGAAATTATTATTAAAAATGAAAAATTTGATGAAAGTAATTCAATCGAACATATAACAATTAAAGAAGAAAATAATATAATGGAGGATCATGAACCAATTAAAAAGGAAATACAAGAAGAAAATGTTACAACAAAACACGAAAGGATTGATTTGAATGAAGAGTTTTCCATGGATAAATATAAAACAGTTAAAGTTGAAAATCAATTAAATGCAGAAGTTATAATAAAGAAGGAAACATTTGATGAAACTGTTTTTGATCATCAATCAATTCAAAGTGAAGACGAGAATACTTCATGTAACGTTTGTGATAAAAAATTTACTGATCAAAGCACTTTAATTGTACATAAACGAATTCATAGCGAAGAAAAATCTTTTTCATGTACAATTTGTGATAAAACCTTTACTGTAAAACATGATTTAATTCGACATGAACAAATCCATACTGGAGAAAAACGTTTTTCATGTTCAATTTGTGATAAAGCATTTAATTTCAAACACAATTTAGTTATACATGAACGAACTCATAGTGGCGAAAAACCTTTTTCCTGTGAATTTTGTGATAAATCATTTAGTCAGAAACTCAATTTGGATAATCACAAATGGACTCATTCTGAAGAAAAACCTTTTTCCTGTAAAATTTGTAATAAAACATTTACAACGAAAAATAATTTAATTGTGCATAAACGAATTCATAGTGGTGAAAAACCTTTTTCCTGTGAATTTTGTGATAAATCATATTCTCAGAGAAGCAGTTTTGATTATCATAAACGGACTCATACTGGAGAAAAACTTTTTTCCTGTGAAGTTTGTGATAAATCATTTACTCAGAAACTCAGTTTGGATAATCATAAATGGACTCATATTGAAGGAAAACCTTTTTCCTGTGAAATTTGTGATAAAGCATTTACTTCCAAAAACAATTTAATTGTGCATGAACGAATTCATAGTGGTGAAAAACCTTTTTCTTGTGAGTTTTGTGATAAATCATTTACTCAGAAAATCAGTTTGGATTATCATAAACGGACTCATACTGGAGAAAAACCTTACTCTTGTGACATTTGTGGTAAATCATATACACAGCAAAACAGTTTAGTTGTACATAAATGGACACACACTGGGGAAAAACCATTTTCCTGTAACATTTGCGATAAATCATTTACTCAGAAAACCATTTTAGATAGTCATACACGGACTCATACTGGCGAAAAACATTTTGTCTGTGAAATTTGTAATAAAGTATTTACTTACAAACCCAATTTACTTAGACATGAACGAATTCATAGTGGAAGAAAACCTTTTTCCTGTGACGTTTGTGATAAAACATTTACTATTCGAGACAATTTAATTACACACAAACGAATGCATACTGGAGAAAAACCATTTTCCTGTGACATTTGTGATAAATCATTTACTACGCGAAGCAGTGTAATTACACACAAACGAATTCATAGTGGAAGAAAACCATATTCCTGTGAGGTTTGTGATAAATCGTTTACTCAGAAAAGCAATTTAGATAATCATAAACGGACGCATACTGGAGAAAAACCTTATTCCTGTGAGGTTTGTGATAAATCGTTTACTCAGAAAATCAGTTTAGATAATCATAAACGGACTCATACTCAAGAAAAACCATTTTCTTTAACAGACTCTTATTGA
Protein Sequence
MENYIEYIAMGKVSKVCLKPGCAPSKFECQEDGRKRPCSSTEQSDTLKEKRMMVMAEGLIKPEGNGTPSSSLKDTSDKSSNGANVPEIFCEVKSRDETLSPLKPSLISVATSPSNAENILKSSPTVSDLRKINGNILIEEKHSEIIIKNEKFDESNSIEHITIKEENNIMEDHEPIKKEIQEENVTTKHERIDLNEEFSMDKYKTVKVENQLNAEVIIKKETFDETVFDHQSIQSEDENTSCNVCDKKFTDQSTLIVHKRIHSEEKSFSCTICDKTFTVKHDLIRHEQIHTGEKRFSCSICDKAFNFKHNLVIHERTHSGEKPFSCEFCDKSFSQKLNLDNHKWTHSEEKPFSCKICNKTFTTKNNLIVHKRIHSGEKPFSCEFCDKSYSQRSSFDYHKRTHTGEKLFSCEVCDKSFTQKLSLDNHKWTHIEGKPFSCEICDKAFTSKNNLIVHERIHSGEKPFSCEFCDKSFTQKISLDYHKRTHTGEKPYSCDICGKSYTQQNSLVVHKWTHTGEKPFSCNICDKSFTQKTILDSHTRTHTGEKHFVCEICNKVFTYKPNLLRHERIHSGRKPFSCDVCDKTFTIRDNLITHKRMHTGEKPFSCDICDKSFTTRSSVITHKRIHSGRKPYSCEVCDKSFTQKSNLDNHKRTHTGEKPYSCEVCDKSFTQKISLDNHKRTHTQEKPFSLTDSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-