Ccar009910.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:13983218-13985770[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1e-05 0.00046 20.9 2.7 1 23 98 120 98 120 0.96 2 19 8.5e-06 0.00018 22.1 2.3 1 23 126 148 126 148 0.97 3 19 0.00017 0.0037 18.0 3.6 1 23 154 176 154 176 0.97 4 19 3.5e-05 0.00076 20.2 0.9 1 23 182 204 182 204 0.95 5 19 7.7e-05 0.0017 19.1 2.3 1 23 210 232 210 232 0.95 6 19 8.7e-06 0.00019 22.1 2.7 1 23 238 260 238 260 0.96 7 19 2e-05 0.00044 20.9 1.9 1 23 266 288 266 288 0.96 8 19 1e-05 0.00023 21.8 1.4 1 23 294 316 294 316 0.98 9 19 0.0001 0.0022 18.7 2.7 1 23 322 344 322 344 0.98 10 19 1.6e-05 0.00036 21.2 3.5 1 23 544 566 544 566 0.96 11 19 0.00036 0.0077 17.0 2.7 1 23 572 594 572 594 0.96 12 19 0.0002 0.0044 17.8 1.8 1 23 600 622 600 622 0.94 13 19 0.00049 0.01 16.6 2.9 1 23 628 650 628 650 0.95 14 19 0.0002 0.0044 17.8 1.8 1 23 656 678 656 678 0.94 15 19 5.6e-05 0.0012 19.6 2.4 1 23 684 706 684 706 0.96 16 19 0.00036 0.0077 17.0 2.7 1 23 712 734 712 734 0.96 17 19 6.1e-05 0.0013 19.4 1.2 1 23 740 762 740 762 0.96 18 19 4.4e-06 9.5e-05 23.0 2.3 1 23 768 790 768 790 0.97 19 19 2.1e-06 4.5e-05 24.0 2.0 1 23 796 818 796 818 0.97
Sequence Information
- Coding Sequence
- ATGGCAACGATTCTGTTTGAAGAAGTCGAAATAAAAAATGAAATATTTGAAGCCAATGATACAATGAAAGACGGACGAATTAAAAATGAAATTCTAGAAGATAGCAACAGTGTTAAAATGGAAGAAATACTAGAAAACAGTAGTGATTTTAAACAAGAACAAATCAATGAAAACGATACAATTAACAATGACAATTTTAAACTTGAAAGACAATTGAACCCAGAATTATTTAGTGTTGATACTGAAGATCAACAAGCATTCTCAAGTAATGTTCATGCTGTAGAAAAGAAACATTTTTGTGATATTTGCAATAAAACATTTAATAATAATAGTAATTTAGTTGAACATAAATTGACTCATAGTGAAAAAAATACTTTTTCATGTGATAAGTGTGATAAAACATTTAATAGACAAAACAGTTTGAATAAACATAAAATAATACATTCTGGTGATAAACTATTTTTTTGTGACATTTGTAATAAAAAATTTACAAGACATTGGAGTTTAGTTCAACACAAACGAATTCACACTGGAGAAAAACCATTTTTATGTGACATTTGTAATAAAGCATTTACGAAACAAAGTTATTTAAATGATCATAAACAGATTCATACTGGTGCAAAGCCATTTTTATGTGATATTTGTAGCAAATCATTTACCCAAAAAAGAACTCTAGTTACTCATAAAAGATCACACACGGGAGAAAAGCCATTTTTATGTGATATGTGTAATAAAGTATTTATAAGTCAAAGTCATTTAAATGAACATAAACGGACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAGTCGGGCATTTACTCATGCGAGTAGTTTAGTTAAACATAAACGAACTCACACCGAAATTAAAGTATTTTCGTGTAATCTTTGTTCTAAATCATTTGCCAGACAAAATAATTTAGTTCAACATAAACGAATCCATAGTGGAGAAAAACCGTTTGTATGTGAGATTTGTAGTAAAGCATTTAATTATTTACGTCATCTACTTAATCATAAAAGGACTCATAATGGGACAAAAAGATTTTCATGTCGTAATAAAACATTTAATGAAAAAAGTAGTTTAGTTGAAAATAAATTGGTTCACACCACGAGTGCGAGTGGTGCTAGTGACCACGAGAAAAAGGAACATTTATTGCCAGCTATTTACGAAAATATTAAACTTGACAAACAATTAAATATAGAAGTCACTATTAAAAATGAAGAATACCCCGATAAATCGCTTCATACCGTAGAAAAAACATTTTCACGAAATAAATCTAGCGAAAACGAGAAAAAGGAACAATTATTGCCAGTTATTTACGAGAATATTAAACTGGAAGAAAGTATTACAATACAAGATGCACACATTAAAAATGAAATATCGAAAGAAAGCATAACTGATAGCATGGAAGAGATGCCTGATAATAAAAGTGGTATTAGTTGGGAATCTGAACGAAGTCATAAAAATGAGGAGCAAAAATTCAATACAGAAATATTGTCCATTCAAGATGAAATATTCGATCCGAATGTTTTAGAACCACACATTCAAATTAACGATCAACCATTTTTATCTCGAAAGTTTGGTTTAATTAAACATAAACGAATTCGCTCGAGAGAAAAAACATTTTTATGTGATATTTGTAGCAAAGCATTTAAGAGTCGAAGTCATTTAAATGATCATAAACGGACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAGTAAATCATTTAGCCATGGAAGTAGTTTATTTAAACATAAACAAATTCACACGGGAGAGAAACCATTTTCGTGTGATGTTTGTAATCTTAGTTTCAATAGACAAAGTAGTTTAAATACACATAAATTTCTTCACACTGGTGAAAAACCATTTTTATGTGATATTTGTAGTAAATCATTTAGCCATGGGAGTAGTTTATTTAAACATAAACAAATTCACACGGGAATGAAACCATTTTCGTGTGATGTTTGTAATCTTAGTTTCAATAGACAAAGTAGTTTAAATACACATAAATTTCTTCACACTGGTGAAAAACCATATTTATGTGATATTTGTAGCAGAGCATTTAAGAGCCGAGGTCATTTAAATGATCATAAACGGACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAGTAAATCATTTAGCCATGGAAGTAGTTTATTTAAACATAAACAAATTCACACGGGAGAGAAACCATTTTCGTGTGATGTTTGTAATCTTAGTTTCAATAGACAAAGTAGTTTAAATACACATAAACTTCTTCACACTGGTGAAAAACCATTTTCATGTGATATTTGTAACCGAACATTTAATAAGAAAAGTAATTTAAATAAACATAAATTGATTCATAGTGGAGAAAAACCATTTTCATGTGACATTTGTAGTAAATCATTTTCAGATAAAAGTAATTTAAGTAAACATAAAAAGGGTCACATTAAGACTGAGGTAACACGAGCCCAATCGATTTTAACACATGTTTTTTCAACTGCAACTATTATTACAAACAATTCAAACAAAAAACTTGCCTTGTAA
- Protein Sequence
- MATILFEEVEIKNEIFEANDTMKDGRIKNEILEDSNSVKMEEILENSSDFKQEQINENDTINNDNFKLERQLNPELFSVDTEDQQAFSSNVHAVEKKHFCDICNKTFNNNSNLVEHKLTHSEKNTFSCDKCDKTFNRQNSLNKHKIIHSGDKLFFCDICNKKFTRHWSLVQHKRIHTGEKPFLCDICNKAFTKQSYLNDHKQIHTGAKPFLCDICSKSFTQKRTLVTHKRSHTGEKPFLCDMCNKVFISQSHLNEHKRTHTGEKPYLCDICSRAFTHASSLVKHKRTHTEIKVFSCNLCSKSFARQNNLVQHKRIHSGEKPFVCEICSKAFNYLRHLLNHKRTHNGTKRFSCRNKTFNEKSSLVENKLVHTTSASGASDHEKKEHLLPAIYENIKLDKQLNIEVTIKNEEYPDKSLHTVEKTFSRNKSSENEKKEQLLPVIYENIKLEESITIQDAHIKNEISKESITDSMEEMPDNKSGISWESERSHKNEEQKFNTEILSIQDEIFDPNVLEPHIQINDQPFLSRKFGLIKHKRIRSREKTFLCDICSKAFKSRSHLNDHKRTHTGEKPYLCDICSKSFSHGSSLFKHKQIHTGEKPFSCDVCNLSFNRQSSLNTHKFLHTGEKPFLCDICSKSFSHGSSLFKHKQIHTGMKPFSCDVCNLSFNRQSSLNTHKFLHTGEKPYLCDICSRAFKSRGHLNDHKRTHTGEKPYLCDICSKSFSHGSSLFKHKQIHTGEKPFSCDVCNLSFNRQSSLNTHKLLHTGEKPFSCDICNRTFNKKSNLNKHKLIHSGEKPFSCDICSKSFSDKSNLSKHKKGHIKTEVTRAQSILTHVFSTATIITNNSNKKLAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -