Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:5354014-5355615[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.6e-05 0.001 19.8 6.8 2 23 113 134 112 134 0.97

2 15 1.4e-06 2.9e-05 24.6 0.4 1 23 140 162 140 162 0.98

3 15 1.7e-05 0.00038 21.1 3.2 1 23 168 190 168 190 0.98

4 15 5.1e-06 0.00011 22.8 7.2 1 23 196 218 196 218 0.98

5 15 2.5e-06 5.3e-05 23.8 1.0 1 23 224 246 224 246 0.98

6 15 4.8e-07 1e-05 26.1 4.0 1 23 252 274 252 274 0.98

7 15 1e-06 2.2e-05 25.0 0.6 1 23 280 302 280 302 0.98

8 15 2.4e-05 0.00053 20.7 3.6 1 23 308 330 308 330 0.98

9 15 2.5e-06 5.3e-05 23.8 1.0 1 23 336 358 336 358 0.98

10 15 1e-06 2.2e-05 25.0 3.7 1 23 364 386 364 386 0.96

11 15 2.9e-06 6.2e-05 23.6 7.1 1 23 392 414 392 414 0.98

12 15 4e-06 8.7e-05 23.1 7.5 1 23 420 442 420 442 0.98

13 15 2.5e-06 5.3e-05 23.8 1.0 1 23 448 470 448 470 0.98

14 15 4.7e-07 1e-05 26.1 4.8 1 23 476 498 476 498 0.98

15 15 0.00011 0.0025 18.6 5.8 1 23 504 526 504 526 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.6e-05	0.001	19.8	6.8	2	23	113	134	112	134	0.97
2	15	1.4e-06	2.9e-05	24.6	0.4	1	23	140	162	140	162	0.98
3	15	1.7e-05	0.00038	21.1	3.2	1	23	168	190	168	190	0.98
4	15	5.1e-06	0.00011	22.8	7.2	1	23	196	218	196	218	0.98
5	15	2.5e-06	5.3e-05	23.8	1.0	1	23	224	246	224	246	0.98
6	15	4.8e-07	1e-05	26.1	4.0	1	23	252	274	252	274	0.98
7	15	1e-06	2.2e-05	25.0	0.6	1	23	280	302	280	302	0.98
8	15	2.4e-05	0.00053	20.7	3.6	1	23	308	330	308	330	0.98
9	15	2.5e-06	5.3e-05	23.8	1.0	1	23	336	358	336	358	0.98
10	15	1e-06	2.2e-05	25.0	3.7	1	23	364	386	364	386	0.96
11	15	2.9e-06	6.2e-05	23.6	7.1	1	23	392	414	392	414	0.98
12	15	4e-06	8.7e-05	23.1	7.5	1	23	420	442	420	442	0.98
13	15	2.5e-06	5.3e-05	23.8	1.0	1	23	448	470	448	470	0.98
14	15	4.7e-07	1e-05	26.1	4.8	1	23	476	498	476	498	0.98
15	15	0.00011	0.0025	18.6	5.8	1	23	504	526	504	526	0.98

Sequence Information

Coding Sequence: ATGGCGAGTAAGTCATTTCAAAACGAAAATACTGATTTATTTGTCAGTGAAGAACAAATAAATAGAAACAAATTAAACGAATTAAATACAGAAGTGATTATTAAAACTGAAATATTTGATGTGAGTGAAAGTGATTCAATAGATTATAAAGAACCATTCAAAGGTGGACAAGAAGGAATTGAAGAAGAAGGAATACTTGAAGAAACTGATATTAAAATGGAGAATGAACGAATTAAACTTGAACAAAAATTAAATACTGAATTAATTATTAAAGATGAAATATTTGATGGAAATGATTTAGAATTTCATAATATTGAAAATGAAGAAACATCTTTAACATGTGAAGTGTGTGATAAAACTTTTAATAAAAAACACCATTTAACTAGCCATAAACGAACTCATACTGATAAAAAACGTTTTTCATGTGAAGTGTGTGATAAATCATTTAATAATAAAATCGACTTAATTCGGCATGAACGAATTCATACTGGGGAAAAACCTTTTTCATGTGAAGTGTGTGATAAAACATTTACACAGACCTGTAATTTAATTCAACATAAACGAATTCATACAGGGGAAAAACCATTTTCCTGTGAACTGTGTGATAAAACATTTAAGCATAATTATCATTTAATTCGACATAAACGAACTCATACAGGTGAAAAACCTTTTTCATGTGAACTGTGTGATAAATCATTTAAAAGAAAACTCGATTTAATTCGGCATGAACGAATTCATACAGGGGAAAAACCTTTTTCATGTGACATGTGTGATAAAGCATTTACGCGTAATTATCATTTAATTCGACATAAACGAACTCATACAGGGGAAAAACCTTTTTCATGCGAATTGTGTGATAAATCATTTAATAGAAAAGTCGATTTAATTCGGCATGAACGAATTCATACCAAGGAAAAACCTTTTTCATGTGACATGTGTGATAAAACATTTTCACAGACGTGTAATTTAATTCAACATAAACGAATTCATACAGGGGAAAAACCTTTTTCATGTGAACTGTGTGATAAATCATTTAAAAGAAAACTCGATTTAATTCGGCATGAACGAATTCATACAGGGGAAAAACCTTTTTTATGTGACATGTGTGATAAAGTATTTACGCGTAATTATCATTTAATTCGACATAAACGAACTCATACAGGGGAAAAACCTTTTTCATGTGACATGTGTGATAAAACATTTACGCATAATTATCATTTAATTCGACATAAACGAACTCATACAGGTGAAAACCCTTTTTCATGTGACATGTGTGATAAAACATTTAAGCATAATTATCATTTAATTCGACATAAACGAACTCATACAGGGGAAAAACCTTTTTCATGTGAATTGTGTGATAAATCATTTAAAAGAAAACTTGATTTAATTCGGCATGAACGAATTCATACAGGGGAAAAACCTTTTTCATGTGACATGTGTGATAAAACATTTACGCATAATTATAATTTAATTCGACATAAACGAACGCATACAGGTAAAAAACCTTTTTCATGTGACATGTGTGATAAAACATTTTCACATACCTGTAATTTAATTCAACATAAACGAATTCATACAGGTGAAAAACCTTTTCCATGA
Protein Sequence: MASKSFQNENTDLFVSEEQINRNKLNELNTEVIIKTEIFDVSESDSIDYKEPFKGGQEGIEEEGILEETDIKMENERIKLEQKLNTELIIKDEIFDGNDLEFHNIENEETSLTCEVCDKTFNKKHHLTSHKRTHTDKKRFSCEVCDKSFNNKIDLIRHERIHTGEKPFSCEVCDKTFTQTCNLIQHKRIHTGEKPFSCELCDKTFKHNYHLIRHKRTHTGEKPFSCELCDKSFKRKLDLIRHERIHTGEKPFSCDMCDKAFTRNYHLIRHKRTHTGEKPFSCELCDKSFNRKVDLIRHERIHTKEKPFSCDMCDKTFSQTCNLIQHKRIHTGEKPFSCELCDKSFKRKLDLIRHERIHTGEKPFLCDMCDKVFTRNYHLIRHKRTHTGEKPFSCDMCDKTFTHNYHLIRHKRTHTGENPFSCDMCDKTFKHNYHLIRHKRTHTGEKPFSCELCDKSFKRKLDLIRHERIHTGEKPFSCDMCDKTFTHNYNLIRHKRTHTGKKPFSCDMCDKTFSHTCNLIQHKRIHTGEKPFP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -