Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997756.1:4377076-4379592[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.2e-07 4.7e-06 27.1 5.5 1 23 93 115 93 115 0.98

2 17 5.1e-05 0.0011 19.7 2.3 1 23 121 143 121 143 0.98

3 17 1e-05 0.00023 21.8 2.6 2 23 150 171 149 171 0.97

4 17 3e-06 6.4e-05 23.6 1.4 1 23 177 199 177 199 0.97

5 17 3.8e-06 8.3e-05 23.2 4.5 1 23 205 227 205 227 0.98

6 17 0.00016 0.0034 18.1 0.6 1 23 272 294 272 294 0.97

7 17 0.00018 0.004 17.9 0.9 1 23 300 322 300 322 0.98

8 17 4e-06 8.7e-05 23.1 2.6 1 23 328 350 328 350 0.98

9 17 5.4e-07 1.2e-05 25.9 1.7 1 23 356 378 356 378 0.98

10 17 0.02 0.43 11.5 3.4 1 23 384 406 384 406 0.98

11 17 8.8e-06 0.00019 22.1 1.2 1 23 412 434 412 434 0.97

12 17 0.031 0.66 10.9 0.9 1 23 440 462 440 462 0.97

13 17 5e-07 1.1e-05 26.0 1.6 1 23 468 490 468 490 0.99

14 17 6.1e-06 0.00013 22.6 5.7 1 23 496 518 496 518 0.98

15 17 4.3e-06 9.3e-05 23.1 3.4 1 23 524 546 524 546 0.99

16 17 2.5e-05 0.00054 20.6 0.5 1 23 552 574 552 574 0.98

17 17 1.3e-05 0.00027 21.6 2.1 1 23 580 602 580 602 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.2e-07	4.7e-06	27.1	5.5	1	23	93	115	93	115	0.98
2	17	5.1e-05	0.0011	19.7	2.3	1	23	121	143	121	143	0.98
3	17	1e-05	0.00023	21.8	2.6	2	23	150	171	149	171	0.97
4	17	3e-06	6.4e-05	23.6	1.4	1	23	177	199	177	199	0.97
5	17	3.8e-06	8.3e-05	23.2	4.5	1	23	205	227	205	227	0.98
6	17	0.00016	0.0034	18.1	0.6	1	23	272	294	272	294	0.97
7	17	0.00018	0.004	17.9	0.9	1	23	300	322	300	322	0.98
8	17	4e-06	8.7e-05	23.1	2.6	1	23	328	350	328	350	0.98
9	17	5.4e-07	1.2e-05	25.9	1.7	1	23	356	378	356	378	0.98
10	17	0.02	0.43	11.5	3.4	1	23	384	406	384	406	0.98
11	17	8.8e-06	0.00019	22.1	1.2	1	23	412	434	412	434	0.97
12	17	0.031	0.66	10.9	0.9	1	23	440	462	440	462	0.97
13	17	5e-07	1.1e-05	26.0	1.6	1	23	468	490	468	490	0.99
14	17	6.1e-06	0.00013	22.6	5.7	1	23	496	518	496	518	0.98
15	17	4.3e-06	9.3e-05	23.1	3.4	1	23	524	546	524	546	0.99
16	17	2.5e-05	0.00054	20.6	0.5	1	23	552	574	552	574	0.98
17	17	1.3e-05	0.00027	21.6	2.1	1	23	580	602	580	602	0.98

Sequence Information

Coding Sequence: ATGACAAATAATTTAAATAATCAATTTGTTAATATAGAAAACATTAAACTTGAACCAGAATTCAATAATGTTGAACAAAAAATTACTGAAATTAATGAAAAAAGTGAAACAATTGAGTTTGTAAGGATTAAAGAAGAAATATCTGAAGAAACATTTGCAAGGGAAGATGAATTAATTGAAGAGGAAATATCAGGAGAAACTTTTAAAAATGTGCGGCTTAAAGAAGAAATACAAGAAGAAACTGCCGAAAATCGGATTAATATTGAACGGAAATGTTTTTCATGTGACTTTTGTGACAAAACATTTACTCAGAAACATAATTTAACTAAACATATAAGAACTCATACCGGAGAAAAACCTTATTCGTGTGAAGCTTGTGATAAAAAATTTACTTTTAAACACGGTTTAAATCAACATATACGAATTCATACCGGTGAAAAACCTTTAACATGTGAATTTTGTGGTAAAAAATTTCGTAATCATAGCAATTTAGTTGTTCATAAACGAATTCATACTGGGGTAAAACCATTTTCTTGTGAACTTTGTGATAAAAAATTTAATTCGCAGAGTGATTTAACTCGTCATAAATTAATTCACACCGGAGAAAAACCTTATTCATGTGAAATTTGTAATAAAAAATTTAGTCAAAAACATAATTTAAATGTACATAAACGAAATCATTTTCGGGGAGACGATTTGAATATAAAGTCTGAAACTATTAGCTCGGGTTCTGAAACGAGATCTGTAGTGATTAATAATGAAGAAAAATGTTTTTCTTATGAAGTTTGTGATACTCAAAATGTAGAAAAATCATTTTCATGTGAACTTTGTGATGAAAAATTTAAATCGCAAAATTTGTTAACCGTGCATAAACTAATTCACACCGGAGGAAATCCTTATTCATGTAAATTTTGTGATAAACTATTTTCTAAAAAGCCACAGTTAATTATACATGAAAGAATTCATACCGGGGAAAAACCGTTTACTTGTGAAGTTTGTGATAAAAAATTTAATGATCGAAGTAGTTTTATTAGACATAAGCGAAGTCATACTGGGGAAAAACCATTTTCTTGTGAAATTTGTAATAAATCATTTAATTACAAAGATAATTTAATTAAACATAAACGAATTCATACCGGGGACAAACCATTTTCTTGTGAAATTTGTGATAAACGATTTTTACAGAAATGCGTTTTAGTTCAACATAAACGAACACATACTGGGGAAAAACCATTTTCATGTGAACTTTGTGATAAAAAATTTACTCAACAAAATGCTTTAAACCGTCATAAACTAATCCATAATGCAAAAAAACCGTTTTCATGTGAAATTTGTGATACTAAATTCGGTTTGAAACATGTTTTAATTCAGCACAAACTAATTCATACTGGGATTAAACCTTATTCTTGTGAAGTTTGTGATAAAAGATTTATACAGAAAAGCGATTTACTTAAACATAAACGAACGCACACTGGAGAAAAACCATTTTCTTGTGACGTTTGTAATAAGACATTTAGTCATAACCATAATTTAATTAAACATAAAAGAATTCATACCGGGGAAAAACCTTATTCATGTTCATATTGTGATAAAAAGTTTAGTAGTTATAGTAACTTTGTTGTTCATAAACGAACGCATACTGGGGAAAAACCATTTTCTTGTGAAATTTGTGATAAAAAGTTTAATGCATCGGGTGATTTAACTCGGCATAAACAAATTCACTCGGGAGAAAAACCGTATTCGTGTGAAATTTGTAATAAAATATTTAGTCGAAGAGATCATTTAATTGGACATAAACGAAATCATTTTGAAGAAAAACCGTCGAATTTGAAGTCTGAAACTGTTACGATGGAACATGGAAGAGTTAAAGAAGAAATAACAGAGGAAATTGTTAAAATTGAACATGTATTAATTAAAGAAGAAATAGTCGATGTAAATTTTTAA
Protein Sequence: MTNNLNNQFVNIENIKLEPEFNNVEQKITEINEKSETIEFVRIKEEISEETFAREDELIEEEISGETFKNVRLKEEIQEETAENRINIERKCFSCDFCDKTFTQKHNLTKHIRTHTGEKPYSCEACDKKFTFKHGLNQHIRIHTGEKPLTCEFCGKKFRNHSNLVVHKRIHTGVKPFSCELCDKKFNSQSDLTRHKLIHTGEKPYSCEICNKKFSQKHNLNVHKRNHFRGDDLNIKSETISSGSETRSVVINNEEKCFSYEVCDTQNVEKSFSCELCDEKFKSQNLLTVHKLIHTGGNPYSCKFCDKLFSKKPQLIIHERIHTGEKPFTCEVCDKKFNDRSSFIRHKRSHTGEKPFSCEICNKSFNYKDNLIKHKRIHTGDKPFSCEICDKRFLQKCVLVQHKRTHTGEKPFSCELCDKKFTQQNALNRHKLIHNAKKPFSCEICDTKFGLKHVLIQHKLIHTGIKPYSCEVCDKRFIQKSDLLKHKRTHTGEKPFSCDVCNKTFSHNHNLIKHKRIHTGEKPYSCSYCDKKFSSYSNFVVHKRTHTGEKPFSCEICDKKFNASGDLTRHKQIHSGEKPYSCEICNKIFSRRDHLIGHKRNHFEEKPSNLKSETVTMEHGRVKEEITEEIVKIEHVLIKEEIVDVNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -