Ccar020635.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:1964974-1967497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.2e-06 4.8e-05 24.0 4.4 1 23 78 100 78 100 0.98 2 18 5.8e-06 0.00012 22.6 1.5 1 23 106 128 106 128 0.97 3 18 1.9e-05 0.0004 21.0 2.3 1 23 134 156 134 156 0.97 4 18 6.1e-06 0.00013 22.6 1.9 1 23 162 184 162 184 0.98 5 18 4.5e-06 9.8e-05 23.0 2.3 1 23 190 212 190 212 0.98 6 18 0.024 0.51 11.3 0.4 1 23 266 288 266 288 0.95 7 18 1.6e-06 3.5e-05 24.4 0.6 1 23 395 417 395 417 0.98 8 18 0.00013 0.0029 18.4 2.7 1 23 423 445 423 445 0.97 9 18 2.1e-05 0.00045 20.9 1.6 1 23 451 473 451 473 0.97 10 18 9.5e-06 0.00021 22.0 2.3 1 23 479 501 479 501 0.98 11 18 0.00018 0.0039 17.9 1.7 1 23 507 529 507 529 0.98 12 18 2.1e-05 0.00045 20.9 1.7 1 23 535 557 535 557 0.98 13 18 7.6e-05 0.0016 19.1 0.9 1 23 563 585 563 585 0.98 14 18 1.1e-06 2.3e-05 25.0 0.7 1 23 591 613 591 613 0.98 15 18 0.0015 0.033 15.0 2.9 1 23 619 641 619 641 0.98 16 18 1.9e-06 4.1e-05 24.2 1.2 1 23 647 669 647 669 0.97 17 18 8.1e-05 0.0018 19.0 2.2 1 23 675 697 675 697 0.97 18 18 0.00084 0.018 15.8 1.8 1 23 703 725 703 725 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATGGGCTAATTACAGCTAATCATGGAATAGGAGTTAAACTTGAAAAAGGAGAAATATTGGACGAAAATGTGTTGATTAAACAAGAGATCGATTTAGGAGAAATATTTATTAAAGAAGAAATATCAGAAGAAAGTTTTAAGTCGGAACATGAACTAATTACAGCTGAATATGAAACCGATGAATTAGAAATCAAAAGCTCTTTAAACGCTCAACAAAACAAACCACATTCCTGTGATTTTTGTGACAAAACATTTAAATATCGAAGTGATTTAGCTAGACATCAACGAACTCATAATGAAGAAAGACCTTTCTCATGTGCGGGTTGTTATAAAAAATTTACACAACAGAGCAGTTTAAAAAGACATCAAATAATTCACAGTGGAGAAAAACCATTTTCATGTGATATTTGTGGTAAAAAATTTACTCAACTTTGCTCGTTAAAAACACATCAAGCAATTCATGCTGGAAAAAAATCATTTTCATGTGAATTTTGTGGCAAAAAATTTAGTTCGCGAAGTAGTTTAGTGAAACATAATCGAATTCACACGGGAGAAAGACCTTATTCGTGTAAGATTTGTAATAAAAGTTTTACGCAACTAAATAGTTTGAAGAGACATAAATTAATTCACATTAAAGAAAAACGCTTGGAAAAATTTAAAGAAGAAAATATACAAATTAAAGAAGAAGTAAATTTGGAGCAAGTTGTAATTAAAGAGGAAGCATTCGAAGTAAATGACTCCGAATTAGAGGTGAAAACTGCTATAAAACATCAAAAAAATAGAGAAGAATATTCGTGTGAAATTTGTGATACAAAATTTAGTTTGCAAAGTATTTTAGATAAACATAAAATAATTCATACCCAAGACAATCGTACCGATGAAGTTTTTGAAGAAGAAAACGTTTTGGTTAAAGAAGAACTAATTGAAATCGATGAAAAACCATTTTTACTTGATATGAGTGATGAAAAATTTGGGAAAAATAATAAATTTGATGAAGAATTTACGAAAAGTGGACTAATTGAAGAAGGAAATGTACAAGAAAGAGTAAATTTGGAGCAAGTATTAATTAAAGAGGAAATAATAGAAGACCATGACACAATGGAACTGAAACTGAAAGATCGAACAACAGAACAATTAGAAGTTAGAACTGTTTCAAAAGGTCAAATAAATAAAAAATATTCGTGCGATTTTTGTGAAAAAAAATTTAAGAGTCCAAGTGATTTAATTGTGCATCAACGAATTCACACCGGGGAAAAACCATTTTCATGTGAAGTTTGTGATAAAAAATTTACTCAACGAAGTGTGTTAAAATCACATAAATTTACTCATACGGGAGAAAAACCATTTCCATGTGACGTGTGTGACAAAAAATTTTCTCAATATAGCACATTAAAAACACATAAAGTAACTCATGCTGGAAAAAAAGCATTTTCATGTGAAATTTGTGATAAAAAATTTAATCAAAAAAATAATTTATATAAACATAAAATGGTTCATACGGGTGAAAAACCATTTTCTTGTGAAATTTGTAATAAAAAATTTAATCGACGAAGTATTTTAATTGAACACAAACGAACTCATACAGGAGAAAAACCATTTTCATGTGAGATTTGTGAGAAAAAATTTACTCAACTTAGCACGTTAAAAACACATAAAGCTACTCACACGGGAGAAAAAACATTTTCATGTCAAGTTTGTGACAAAAAATTTAGTCTACAAAGTGTTTTAATTGTCCACAAACGAACTCATACGGGAGAGAAACCATTTTCGTGTGAAGTTTGTGGGAAGAAATTTACTCAACTTAGCACTTTAAAGGCTCATCAAGTAACTCATACCGGAAAAAACAAATTTTCATGTGATTTTTGTGACAAAACATTTAAATGTCGAAGTGATCTAGCTGGACATCAACGAATCCATACTGGTGAAAGACCTTTCTCATGTACAGATTGTGATAAAACATTTACGCTAGCGAGTAGTTTAAAAAGACATCAAATAAATCATAGCGGAGAAAAACCATTTTCATGTGAAGCTTGTGATAAAAAATTTACTCAACAAAGCGCGTTAAAAACACATAAATTTACTCATACTGGAGAAAAACCATTTTCCTGTGAAGTTTGTGATAGAAAATGTCAAAATCGAAGAGATTTAGTCGTGCATCAACGAATCCATACCGGAGAAAAACCTTTCTCATGTGATATTTGTGTTCGTCATAAACTAACTCATTCTTTTAGCCAACAAAGTAGTCACGTCGATAAAGATTTTATCGATGAAGTATTTGAAGAAAAAATCGATTTGGTTAGAAAAGAATTTATTGACATCGATGAAAAACCATTTTTACTTGACTTGAGTGATGAAAAACTTGAAAAAAATAATAAATTTGATAAAGAATATACAAAAGAATGA
- Protein Sequence
- MEDGLITANHGIGVKLEKGEILDENVLIKQEIDLGEIFIKEEISEESFKSEHELITAEYETDELEIKSSLNAQQNKPHSCDFCDKTFKYRSDLARHQRTHNEERPFSCAGCYKKFTQQSSLKRHQIIHSGEKPFSCDICGKKFTQLCSLKTHQAIHAGKKSFSCEFCGKKFSSRSSLVKHNRIHTGERPYSCKICNKSFTQLNSLKRHKLIHIKEKRLEKFKEENIQIKEEVNLEQVVIKEEAFEVNDSELEVKTAIKHQKNREEYSCEICDTKFSLQSILDKHKIIHTQDNRTDEVFEEENVLVKEELIEIDEKPFLLDMSDEKFGKNNKFDEEFTKSGLIEEGNVQERVNLEQVLIKEEIIEDHDTMELKLKDRTTEQLEVRTVSKGQINKKYSCDFCEKKFKSPSDLIVHQRIHTGEKPFSCEVCDKKFTQRSVLKSHKFTHTGEKPFPCDVCDKKFSQYSTLKTHKVTHAGKKAFSCEICDKKFNQKNNLYKHKMVHTGEKPFSCEICNKKFNRRSILIEHKRTHTGEKPFSCEICEKKFTQLSTLKTHKATHTGEKTFSCQVCDKKFSLQSVLIVHKRTHTGEKPFSCEVCGKKFTQLSTLKAHQVTHTGKNKFSCDFCDKTFKCRSDLAGHQRIHTGERPFSCTDCDKTFTLASSLKRHQINHSGEKPFSCEACDKKFTQQSALKTHKFTHTGEKPFSCEVCDRKCQNRRDLVVHQRIHTGEKPFSCDICVRHKLTHSFSQQSSHVDKDFIDEVFEEKIDLVRKEFIDIDEKPFLLDLSDEKLEKNNKFDKEYTKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -