Ccar005910.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:87863124-87865631[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.2e-05 0.00048 20.8 1.4 1 23 81 103 81 103 0.97 2 21 5.6e-05 0.0012 19.5 5.7 1 23 109 131 109 131 0.98 3 21 7.1e-06 0.00015 22.4 2.4 1 23 137 159 137 159 0.98 4 21 0.00012 0.0025 18.6 3.4 1 23 165 187 165 187 0.98 5 21 1.1e-05 0.00024 21.8 3.2 1 23 193 215 193 215 0.98 6 21 0.23 4.9 8.2 2.3 1 23 221 243 221 243 0.95 7 21 7.5e-05 0.0016 19.1 3.3 1 23 249 271 249 271 0.98 8 21 3.6e-05 0.00078 20.2 3.0 1 23 277 299 277 299 0.96 9 21 4.2e-05 0.00092 19.9 2.6 1 23 305 327 305 327 0.96 10 21 1.9e-06 4.1e-05 24.2 1.3 1 23 333 355 333 355 0.98 11 21 0.0002 0.0042 17.8 2.0 1 23 361 383 361 383 0.96 12 21 6.5e-06 0.00014 22.5 2.2 1 23 389 411 389 411 0.96 13 21 2.1e-05 0.00045 20.9 2.6 1 23 562 584 562 584 0.96 14 21 0.00015 0.0032 18.2 2.7 1 23 590 612 590 612 0.96 15 21 0.012 0.27 12.2 4.0 1 23 618 640 618 640 0.95 16 21 0.014 0.31 12.0 7.4 1 23 646 668 646 668 0.96 17 21 0.00073 0.016 16.0 2.5 1 23 674 696 674 696 0.94 18 21 0.0022 0.047 14.5 4.4 1 23 702 724 702 724 0.98 19 21 3.6e-05 0.00077 20.2 2.1 1 23 730 752 730 752 0.98 20 21 4.7e-05 0.001 19.8 3.0 1 23 758 780 758 780 0.97 21 21 8.7e-07 1.9e-05 25.2 1.9 1 23 786 808 786 808 0.97
Sequence Information
- Coding Sequence
- ATGGCAAATAATTTAATTGATGAAGTCGAAATTAAAAATGAAATTGTAGAAGCCGATACAATGCAAAATGAGCGAATTAAAAATGAAATTCAAGAAGACAGCAGCAGTGTTAAAATGGAAGAAATACTAGAAAACAGCAGCGATTTAAAAGATGAAGAAAATAATGAAAATGATACAATTAACAACGAAAATGTTAAACTTGAAAGTGAATTAAGTGGTGACACTGAAGATCAACAAACATTCCCATGTAATGTTTGTGACAAAACATTTTCCAGGCATTGGGGCTTAATTCAACATAAACGACTTCACCCTGGAGAAAAGCCATATTTTTGTGATGTGTGTAACAAAACATTTAATAAGAAAAGTAATTTAGTGAAACATAAATGTACACATACTGAAGAAAATTCATTTTCATGTGATAAGTGTGACAAAACATTCAACAGAAAAAACAGTTTGATTAAACACAAAATGATACATTCTGGGAGTAAACCATTTTCATGTGACATTTGTAATAAAACATTTAACAGACATTGGAGTTTAGTTCAACACAAGCGAAATCACACTGGAGAAAAATTATTTTCTTGTGACATATGTAATAAAAAATTTGTTACTAGTACTCATTTAATTGAACATAAACGGACTCATACGGGAGAAAAACCATTTTTATGTGAATTGTGTAATGCAACTTTTCATCGTAAAAGTATTTTAGTTAAACATAAAATGTCACATACTGGTGAAAAACCATTTTCATGTAATGAATGTCAAAAAACATTTACTAGGCATTGGAGTTTACTTGAACATAAACGGATACATACTGGTGAGAAACCATATTTATGTGATATTTGTAGTAAATCCTTTACTAATAAAAGCCATTTAGTTGGGCATAAAAAGACTCATACTAAAGAAAAATTATTTTCGTGTGACATTTGTAAGAAAAAATTTAATAGGCATAGTAGTTTAATTAGACATGAAGAAGTTCATACTGGAGTTAAACCATTTTCGTGTGACATTTGTAACAAATCATTTACCAGACAAAGTAGTTTAGATGAACATAAACGGATACATAGTGGAGGAAAGCCGTTTTTATGTGATGTTTGTAGTAAAACATTCAATCAATTAGGCCATTTAGTGGATCATAAAAGGACTCACACCGGAGAAAAACCATTTTCATGTGATATGTGTGATAAAACATTTAATAGAAAAAGTAGTTTAATTAAACATAAATCGCTTCACACCGGAGGAAAAACATTTTCACATAATAAATCAAGTGAACAAGAGAAAGAGGATTCCTTGCCAGTTATTTACGGGAATATTAAAGTTGAAAAACAATTAAATACAGAAGCGATTGCTAAAATAGAAGAAAGTGTACCAGAAGTCATCATTAAAGACGAAGATTGTGTTAAACTTCAAGAAGCACAAATTAAAGATGAAATATTGGAAGAAAGCAACAGCGATAGCATGGAAGAGATACCAGATAACAAAAGTGATATTAGTTGGGAACCTGAACCAAATCATGAAAATGGGAACAAATTAAATACAGAAATATTATCAATTAAAGATGAAATATTAGATCCGAGTGTTTTAGAACCACAAATTCAAATTACCGATAAACCATTTGTATCTCCAAAATTAAAAAGAAAAGGTTCAATCAAACATAAACGGACTTGTACGGAAGAAAAATCATTTTTATGTGATATTTGTAGTAAAGCATTTACGAGCCGAAGTCATTTAAATGAACATAGCAGGACTCATACGGGGGAGAAACCATATTTATGTGATATTTGTAGCAAATCATTTACCCACGGGAGTAGTTTAGTTAAACATAAAAGATCGCACACGGGGGAGAGACCATTTTTATGTGATATGTGTAATAAAACATTTAATTGTAAAAGTAGTTTGGTTCAACATAAACGGATCCATACTGGAGAAAAACCGTATTTATGTGATATTTGTTGTAAATCTTTTAACCATCAAAGTCATTTAGTTGAACATAAAAGGACTCATAGCGGAGAAAAACCATTTTTATGTGATGTTTGTAGTAAATCATTTACCCACGGGAGCACTTTAACTAAACATAAACTGATTCACAGTGTAAATAAACCATTTTCCTGTGATACTTGTAATAAAACATTTTGTCTTAGTAGGCAATTAGTTGAACATAAACGGAGTCACACTGGCGAAAAACCATTTTCTTGTGATATCTGTAATCAAACGTTCAATAGACAAAATAGTTTAAATTCACACAAACGTCTCCATACTGGTGAAAAACCATTTTCATGTGAGACTTGTAGCAGAACATTTAATAAGAAAAGTAATTTAAATAAACATAAATTGATTCACAGCGGTATAAAACCATTTTCATGTGACATTTGTAGTAAATCATTTTCAGATAAAAGTAATTTAAGTAAACATAAACGGGGTCACATTAAAACTGAGGTCACACGAGCTCAATCGATTTTAACACACGTTTTTTCAACAGCACGTTTGTTAGACATGCATAATGAATAA
- Protein Sequence
- MANNLIDEVEIKNEIVEADTMQNERIKNEIQEDSSSVKMEEILENSSDLKDEENNENDTINNENVKLESELSGDTEDQQTFPCNVCDKTFSRHWGLIQHKRLHPGEKPYFCDVCNKTFNKKSNLVKHKCTHTEENSFSCDKCDKTFNRKNSLIKHKMIHSGSKPFSCDICNKTFNRHWSLVQHKRNHTGEKLFSCDICNKKFVTSTHLIEHKRTHTGEKPFLCELCNATFHRKSILVKHKMSHTGEKPFSCNECQKTFTRHWSLLEHKRIHTGEKPYLCDICSKSFTNKSHLVGHKKTHTKEKLFSCDICKKKFNRHSSLIRHEEVHTGVKPFSCDICNKSFTRQSSLDEHKRIHSGGKPFLCDVCSKTFNQLGHLVDHKRTHTGEKPFSCDMCDKTFNRKSSLIKHKSLHTGGKTFSHNKSSEQEKEDSLPVIYGNIKVEKQLNTEAIAKIEESVPEVIIKDEDCVKLQEAQIKDEILEESNSDSMEEIPDNKSDISWEPEPNHENGNKLNTEILSIKDEILDPSVLEPQIQITDKPFVSPKLKRKGSIKHKRTCTEEKSFLCDICSKAFTSRSHLNEHSRTHTGEKPYLCDICSKSFTHGSSLVKHKRSHTGERPFLCDMCNKTFNCKSSLVQHKRIHTGEKPYLCDICCKSFNHQSHLVEHKRTHSGEKPFLCDVCSKSFTHGSTLTKHKLIHSVNKPFSCDTCNKTFCLSRQLVEHKRSHTGEKPFSCDICNQTFNRQNSLNSHKRLHTGEKPFSCETCSRTFNKKSNLNKHKLIHSGIKPFSCDICSKSFSDKSNLSKHKRGHIKTEVTRAQSILTHVFSTARLLDMHNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332715;
- 90% Identity
- -
- 80% Identity
- -