Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:4698469-4700406[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.6 1.2e+02 3.8 0.5 5 13 117 125 116 126 0.87

2 19 3e-05 0.00065 20.4 2.0 1 23 127 149 127 149 0.98

3 19 5e-05 0.0011 19.7 6.3 1 23 155 177 155 177 0.99

4 19 0.0011 0.023 15.5 1.1 1 23 183 205 183 205 0.98

5 19 1.1e-05 0.00023 21.8 0.8 1 23 211 233 211 233 0.98

6 19 0.0043 0.092 13.6 1.0 1 23 239 261 239 261 0.97

7 19 6.1e-06 0.00013 22.6 2.8 1 23 267 289 267 289 0.98

8 19 2.3e-06 5e-05 23.9 1.2 1 23 295 317 295 317 0.98

9 19 6.4e-06 0.00014 22.5 0.7 1 23 323 345 323 345 0.98

10 19 5.1e-06 0.00011 22.8 1.6 1 23 351 373 351 373 0.98

11 19 9.7e-05 0.0021 18.8 2.4 1 23 379 401 379 401 0.98

12 19 0.00026 0.0057 17.4 1.1 1 23 407 429 407 429 0.97

13 19 5.4e-05 0.0012 19.6 6.7 1 23 435 457 435 457 0.97

14 19 0.00035 0.0075 17.1 1.3 1 23 463 485 463 485 0.98

15 19 5.9e-06 0.00013 22.6 1.1 1 23 491 513 491 513 0.98

16 19 0.0027 0.058 14.3 0.8 1 23 519 541 519 541 0.97

17 19 6.1e-06 0.00013 22.6 2.8 1 23 547 569 547 569 0.98

18 19 1.2e-06 2.5e-05 24.8 1.0 1 23 575 597 575 597 0.98

19 19 1.2e-06 2.5e-05 24.8 1.0 1 23 603 625 603 625 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.6	1.2e+02	3.8	0.5	5	13	117	125	116	126	0.87
2	19	3e-05	0.00065	20.4	2.0	1	23	127	149	127	149	0.98
3	19	5e-05	0.0011	19.7	6.3	1	23	155	177	155	177	0.99
4	19	0.0011	0.023	15.5	1.1	1	23	183	205	183	205	0.98
5	19	1.1e-05	0.00023	21.8	0.8	1	23	211	233	211	233	0.98
6	19	0.0043	0.092	13.6	1.0	1	23	239	261	239	261	0.97
7	19	6.1e-06	0.00013	22.6	2.8	1	23	267	289	267	289	0.98
8	19	2.3e-06	5e-05	23.9	1.2	1	23	295	317	295	317	0.98
9	19	6.4e-06	0.00014	22.5	0.7	1	23	323	345	323	345	0.98
10	19	5.1e-06	0.00011	22.8	1.6	1	23	351	373	351	373	0.98
11	19	9.7e-05	0.0021	18.8	2.4	1	23	379	401	379	401	0.98
12	19	0.00026	0.0057	17.4	1.1	1	23	407	429	407	429	0.97
13	19	5.4e-05	0.0012	19.6	6.7	1	23	435	457	435	457	0.97
14	19	0.00035	0.0075	17.1	1.3	1	23	463	485	463	485	0.98
15	19	5.9e-06	0.00013	22.6	1.1	1	23	491	513	491	513	0.98
16	19	0.0027	0.058	14.3	0.8	1	23	519	541	519	541	0.97
17	19	6.1e-06	0.00013	22.6	2.8	1	23	547	569	547	569	0.98
18	19	1.2e-06	2.5e-05	24.8	1.0	1	23	575	597	575	597	0.98
19	19	1.2e-06	2.5e-05	24.8	1.0	1	23	603	625	603	625	0.98

Sequence Information

Coding Sequence: ATGGCGAATAATTCATTTCAAAACGTAAATAGTGATTTATTTATTAGTGAAGAACAAATAAATAAACACGAATTAAACGAATTAAATACAGAACTGATAATTAAAAATGAAATATGTGATGTGAGTGAAAGTGATTCAATAAAATATGAAGAACCATTCAAAGGTGAACACGAAGGAATTAAAGAAGAAGGAATACTTGAAGAAACTGATATTAAGATGGAGAATGAACAAATTATTTTAAATGAACCATTATTAAATACTGAATTACTTATTAAAGATGAAACATTTGATGGAAATGATTTAGAATTTCATACGATTAAAAATGAAGAAACATCTTTGAAGTATAAAGTGTGTGATAAAACTTTTAAAAGAAAACGTTTTTCATGTAAAGTGTGTGATAAATTATTTAATAAAAAACGTGACTTAATTCGACATGAACGAACTCATACTGGAGAAAAACCTTATTCATGTGAAGTGTGTGATAAAACTTTTAATATAAGACATCATTTAACTAGACATAAACGAACTCATACTGGGGAAAAACCATTTTCATGTGAATTTTGTGATAAATCATTTAATTATAAAAACGTTTTAATTGGACATAAACGAATTCATACCGGTGAAAAACCGTTTTCATGTGAAATGTGTGATAAATCATTTACTCAAAAAATCAGTTTAATTTATCATGAACGAATTCATGCTGGTGAAAAACCGTTTTCATGTGAAATATGTGATAAAACATTTATGTTGAAAAGTATTTTAATTCAACATAAAAAAAGTCATACTGGTGAAAAACCATTTTCATGTGAAATGTGTGATAAAAAATTTACGGTGAAAAGTCATTTAATTCAACATGAACGAATGCATACTGGTGAAAAACCATTTTCATGTGAATTATGTGATAAAACATTTTCACAGAAAGGTAGTTTAAATCTACATAAACGAATTCATACCGGTGAAAAACGTTTTTCATGTGAAATGTGTGACAAAATATTTACTCAAAAAAACAGTTTAATTCAACATGAACGAATTCATACCGGTGAAAAACCGTTTTCATGTGTAATGTGTGATAAAACATTTGCTCAAAAAAGCAGTTTAATTCATCATGAACGAATTCATGCTGGTGAAAAACCATTTTCATGTGAAATGTGTGATAAATTATTTAATAAAAAACATGACCTAATCCGACATGAACGAATTCATTCTGGGGAAAAACCATTTTCGTGTGAAGTGTGTGATAAATCATTTTATTATAAATACGTTTTAAATCAACATAAAATAATTCATACTGGTGAAAAACCTTTTGCATGTAAAGTGTGTGATAAAACTTTTAATAAAAGACATCATTTAACTATACATAAACGAACTCATACTGGGGAAAAACCATTTTCCTGTGAATTTTGTGATAAATCATTTAATTATAAAAACGTTTTAATTGAACATAAACGAATTCATACAGGTGAAAAACCGTTTTCATGTGAAATGTGTGATAAATCATTTACTCAAAAAAACAGTTTAATTTATCATGAACGAATTCATGCTGGTGAAAAACCGTTTTCATGTGAAATATGTGATAAAACATTTATGTTGAAAAGTATTTTAATTCAACATACAAAAAGTCATACTGGTGAAAAACCATTTTCATGTGAAATGTGTGATAAAAAATTTACGGTGAAAAGTCATTTAATTCAACATGAACGAATGCATTCTGGTGAAAAACCATTTTCATGTGAATTATGTGATAAAACATTTTCACAGAAAGGTAGTTTAAATGTACATAAACGAATTCATACAGTTGAAAAACCGTTTTCATGTGAATTATGTGATAAAACATTTTCACAGAAAGGTAGTTTAAATGTACATAAACGAATTCATACAGGTGAAAACGTTTTTCATGTGAAATGTGTGACAAAATATTTACTCAAAAAATCAGTTTAA
Protein Sequence: MANNSFQNVNSDLFISEEQINKHELNELNTELIIKNEICDVSESDSIKYEEPFKGEHEGIKEEGILEETDIKMENEQIILNEPLLNTELLIKDETFDGNDLEFHTIKNEETSLKYKVCDKTFKRKRFSCKVCDKLFNKKRDLIRHERTHTGEKPYSCEVCDKTFNIRHHLTRHKRTHTGEKPFSCEFCDKSFNYKNVLIGHKRIHTGEKPFSCEMCDKSFTQKISLIYHERIHAGEKPFSCEICDKTFMLKSILIQHKKSHTGEKPFSCEMCDKKFTVKSHLIQHERMHTGEKPFSCELCDKTFSQKGSLNLHKRIHTGEKRFSCEMCDKIFTQKNSLIQHERIHTGEKPFSCVMCDKTFAQKSSLIHHERIHAGEKPFSCEMCDKLFNKKHDLIRHERIHSGEKPFSCEVCDKSFYYKYVLNQHKIIHTGEKPFACKVCDKTFNKRHHLTIHKRTHTGEKPFSCEFCDKSFNYKNVLIEHKRIHTGEKPFSCEMCDKSFTQKNSLIYHERIHAGEKPFSCEICDKTFMLKSILIQHTKSHTGEKPFSCEMCDKKFTVKSHLIQHERMHSGEKPFSCELCDKTFSQKGSLNVHKRIHTVEKPFSCELCDKTFSQKGSLNVHKRIHTGENVFHVKCVTKYLLKKSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -