Ccar022290.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:1957308-1959467[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.9e-07 2.1e-05 25.1 1.0 1 23 63 85 63 85 0.98 2 18 6.6e-05 0.0014 19.3 1.1 1 23 91 113 91 113 0.99 3 18 0.00057 0.012 16.4 1.8 1 23 119 141 119 141 0.98 4 18 0.00095 0.021 15.7 0.6 2 23 148 169 147 169 0.96 5 18 0.0013 0.028 15.3 0.6 1 23 175 197 175 197 0.98 6 18 2.3e-05 0.00049 20.8 2.1 1 23 203 225 203 225 0.98 7 18 1.5e-05 0.00033 21.3 2.3 1 23 231 253 231 253 0.98 8 18 0.0027 0.058 14.2 1.0 1 23 306 328 306 328 0.98 9 18 6.1e-05 0.0013 19.4 0.9 1 23 334 356 334 356 0.97 10 18 3.4e-05 0.00073 20.2 3.7 1 23 362 384 362 384 0.95 11 18 0.0011 0.025 15.4 1.6 1 23 390 412 390 412 0.98 12 18 8.8e-06 0.00019 22.1 1.5 1 23 418 440 418 440 0.98 13 18 1.3e-05 0.00029 21.5 4.6 1 23 478 500 478 500 0.98 14 18 2.7e-06 5.8e-05 23.7 0.5 1 23 506 528 506 528 0.98 15 18 3e-07 6.6e-06 26.7 1.8 1 23 534 556 534 556 0.98 16 18 0.00015 0.0033 18.2 0.8 1 23 562 584 562 584 0.98 17 18 8.7e-07 1.9e-05 25.2 1.1 1 23 590 612 590 612 0.98 18 18 3.1e-06 6.8e-05 23.5 4.6 1 23 618 640 618 641 0.96
Sequence Information
- Coding Sequence
- ATGGACCAAAATATTGCAGCGAAAAATGTGCTGGTTAAAAATGAAATAAATTTCCAGCAAATATTTATTAAAGAAGAAACATCAGAGGAAAGTGATGATAAAATGCAACATGGGCTAACTACAGCTGAACATGAGACCGATAAACCAGACGTAAAAAATGTTTCTAAATCTACACCAGACAAACCATTTTCATGTGATTTATGTGAAAAAAGTTTTAAATTTCAAAGTAATTTAATTGTGCATCAACGAATTCATACCGGAAAAAATCCATTTACGTGTAAAATTTGTGATCGAAAATTTCGATGGCAAAGTGCTTTAATTGTTCATAAACGAACACATACAAAAGAAAAACAATTTTCGTGTGAGATTTGTAATAAAGAGTGTTCACAGCTACAATTATTAATTCAACATAAACGAATTCATACAGGTGAAAAACCATTATCTTGTGAAATTTGTGATAAAAAATTTAGTTGGCGAAGTAGTTTAATTGAACATAAACGATTACATAGTGATGAAAAATCATTTTCATGTGAAGTTTGTGGCCGAAAATTTAATTGGCGAAGTAGTTTAATTGAACATAAACGTTTACATAGTGATGAAAAATTATTTTCATGTGAGTTTTGTGGCAAAAAATTTAGTTCGCGAACTAGTTTGGTAAAACATAATCGAATTCACACGGGAGAACGACCTTATTCGTGTAAGATTTGTAATAAAAATTTTACGCAACTAAATAGTTTGAAGAGACATAAATTAATTCACATTAAAGAAAAACGCTTGGAAAAATTTAAAGAAGAAAATATACAAATTAAAGAAGAAATAAATTTGGAGCAAGTTGTAATTAAAGAGGAAGCATTCGAAGAAATAGACCCCGAATTAGAGGTGAAAACTGCTACAAAATATCAAAAAAATAAAGAATATTCTTGTGATTTTTGTGATAAAAAATTTAAAGAACGAATCATTTTAACTGTGCATCAACGAATTCACACCGGAGAAAAACCATTTTCATGTGATGTCTGTGAAAAAACATTTTCCCAATCCGGTAGTTTATACAATCATAAAGTAACTCATTACGGGAAACAACGATTTTCATGTGACGTTTGTGATAAAAATTTTACGAGAAAATTCCATTTAAATCGACATAAAGTGATACATAATGGTGAAAAACCATTTTCGTGTGAAATATGTGATGAAAAATTTTGTTGGCAAAGTAGTTTAATTGTACATAAACGATCTCATACGGATGAAAAATCATTTTCATGTGATGTTTGTGGTAGAAAATTTACGAATGTACGTAGTTTAACGCGACATAAAAGAATTCACATCGATGGCGATGAAGTCGAAGAAAATGATTTAATTAAAGAAGAATTACGTGATATTGATGAAAAACTTGAAAACTGTAATAAAATTGTGAGTGAAAGTGATCGAAAATATTTTTCTTGTGAAATTTGTAATAAAAAGTTTAAACATCGAACGAATTTAACAGCTCATAAACGACTTCATTCTGGAAAACGATTATTTTCATGTGAAATCTGTGATAAAGTTTTTACTCAAGCAAACAGTTTATTTGTACATAAACGTATTCATACCGGGGAAAAACCTTTTTCCTGTGAAATTTGTGATAAAAAATTTACACAAAAAAGTGGTTTAAATCGACATAAAAGAATTCACACGGGAGAAAAACCATTTTCGTGTGATTTCTGTGAGAAAACATTTACTCTAGAAAGTGGATTAATTATTCATAAACGAACACATACCGGGGAAAGACCCTTCTCGTGTGAGATTTGTGAAAAAAAATTTACACAATCAAGTAGTTTGAAAATACATCAAATAACTCATACGGGTGAAAAACGTTTTTCATGTGAAATTTGTGAGAAAAAATTTAGTAGGCAAAGTACTTTAAAAGAACATAAAAGAACCCATCATGATAATAAATTGTGTATCGATGAAGTATGCGAAGAAAAAACAGATTTGGTTAAGGAAGAACTTATTGACATCGATGAAAAACCATTTTTACTTGACTTGAGTGATGAAAAACTTGAAAAACATAATAAATTTGATGAAGAATTTACGAAAAATGAAATTATTGAAAAAGAAAATGTTCAAATTAAAGAAGAAATCAATTCGGAGGAAGGATTAATTAAAAAGGAAATATTATTATAA
- Protein Sequence
- MDQNIAAKNVLVKNEINFQQIFIKEETSEESDDKMQHGLTTAEHETDKPDVKNVSKSTPDKPFSCDLCEKSFKFQSNLIVHQRIHTGKNPFTCKICDRKFRWQSALIVHKRTHTKEKQFSCEICNKECSQLQLLIQHKRIHTGEKPLSCEICDKKFSWRSSLIEHKRLHSDEKSFSCEVCGRKFNWRSSLIEHKRLHSDEKLFSCEFCGKKFSSRTSLVKHNRIHTGERPYSCKICNKNFTQLNSLKRHKLIHIKEKRLEKFKEENIQIKEEINLEQVVIKEEAFEEIDPELEVKTATKYQKNKEYSCDFCDKKFKERIILTVHQRIHTGEKPFSCDVCEKTFSQSGSLYNHKVTHYGKQRFSCDVCDKNFTRKFHLNRHKVIHNGEKPFSCEICDEKFCWQSSLIVHKRSHTDEKSFSCDVCGRKFTNVRSLTRHKRIHIDGDEVEENDLIKEELRDIDEKLENCNKIVSESDRKYFSCEICNKKFKHRTNLTAHKRLHSGKRLFSCEICDKVFTQANSLFVHKRIHTGEKPFSCEICDKKFTQKSGLNRHKRIHTGEKPFSCDFCEKTFTLESGLIIHKRTHTGERPFSCEICEKKFTQSSSLKIHQITHTGEKRFSCEICEKKFSRQSTLKEHKRTHHDNKLCIDEVCEEKTDLVKEELIDIDEKPFLLDLSDEKLEKHNKFDEEFTKNEIIEKENVQIKEEINSEEGLIKKEILL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -