Ccar005024.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997756.1:87903945-87906515[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2.2e-05 0.00047 20.8 3.0 1 23 102 124 102 124 0.98
2 21 7.8e-06 0.00017 22.2 1.2 1 23 130 152 130 152 0.97
3 21 6.3e-06 0.00013 22.5 2.1 1 23 158 180 158 180 0.98
4 21 3.6e-07 7.7e-06 26.4 1.0 1 23 186 208 186 208 0.98
5 21 4.4e-06 9.4e-05 23.0 2.3 1 23 214 236 214 236 0.98
6 21 0.18 3.8 8.5 2.5 1 23 242 264 242 264 0.95
7 21 0.0002 0.0044 17.8 2.0 1 23 270 292 270 292 0.98
8 21 3.2e-05 0.00069 20.3 2.1 1 23 298 320 298 320 0.96
9 21 8.8e-05 0.0019 18.9 1.4 1 23 326 348 326 348 0.98
10 21 0.00011 0.0023 18.7 1.1 1 23 354 376 354 376 0.98
11 21 0.0005 0.011 16.6 2.8 1 23 382 404 382 404 0.96
12 21 0.0028 0.061 14.2 7.1 1 23 410 432 410 432 0.96
13 21 0.00012 0.0026 18.5 2.6 1 23 583 605 583 605 0.96
14 21 0.00015 0.0033 18.2 2.7 1 23 611 633 611 633 0.96
15 21 0.013 0.28 12.1 4.0 1 23 639 661 639 661 0.95
16 21 0.015 0.32 11.9 7.4 1 23 667 689 667 689 0.96
17 21 0.00027 0.0059 17.4 1.7 1 23 695 717 695 717 0.95
18 21 0.00026 0.0056 17.5 2.1 1 23 723 745 723 745 0.98
19 21 6.2e-05 0.0013 19.4 2.4 1 23 751 773 751 773 0.98
20 21 5.2e-05 0.0011 19.6 2.2 1 23 779 801 779 801 0.96
21 21 9e-07 1.9e-05 25.2 1.9 1 23 807 829 807 829 0.97

Sequence Information

Coding Sequence
ATGGCAAAAAATTCATTTGATGAAGTCGAAATTAAAAATGAAATATTAGAAGTCGATGCAATGCAAGATGGGCGAATTAAAAATGAAATTCAAGAAGACAGTGTTAAAATGGAAGAAATACTAGAAAACAGCAGTGATTTTAAACATGAAGAAAATAATGAAAATGATACAATTAACAACGAAAATGTTAAACTTGAAACTGATTTGAATACAGAAGTCATTATTAAAAATGAATTACTTAGTATTGATAATGAAGATCAACAACCAATTCAACACAAACGAACACACACAGGAGAAAAAACATTTTCATGTAATATTTGTGACAAAACATTTTCCAGACATTGGAGCTTAGTTCAACATAAACGACTTCATACTGGAGAAAAGCCATATGTTTGTGATGTGTGTAACAAAACATTTAATAATAAAAGTAATTTAGTGGAACATAAATATTCTCATACTGAAGAAAATTCGTTTTCATGTGATAAGTGTGATAAAACATTCAACAGACAAAACAGTTTGATTAAACACAAAATGATACATTCTGGGGATAAACCATTTTCATGTGACATTTGTAATAAAACATTTAACAGAAATTGGAGTTTAATGCAACACATGAGAATTCATACCGGAGAAAAACCATTTGTATGTGATATATGTGATAAAAAATTTGTGAATAGAACTCATTTAATTGAACATAAACGAACTCATACGGGAGAAAAACCATTTTTATGTGATATGTGTAATGCTACTTTTCATCGCAAAAGTATTTTAGTTAAACATAAAATGTCACATACTGGTGAAAAACCATTTTCATGCGATGTGTGTGAAAAAACATTTAATAGACATTGGAGTTTACTTGAACATAAACGGATACATACTGGTGAGAAACCATATCTATGTGATATTTGTAGTAAATCCTTTATCAATAAAAGCCATTTGGTTGGACATAAAAGGACACATAGTAAGGAAAAATCATTTTCATGTGATGTTTGTAATAAAACATTTACTCTTAGCAGGCAATTAGTTGAACATAAACGAATGCATACTGGTGAAAAACTATTTTCGTGTGACATTTGTACTAAATCATTTTCCCGACGAAACGGTTTAGATGTGCATAAACGATTACATAGCGGAGAAAAACCGTTTTTATGTGATATTTGTAGTAGATCATTTAATCAGTTACGCCATTTAGTGGATCATAAAAGGACTCACACCGGAGAAAAACCATTTTCATGTGATATGTGTGATAAAAGATTTAATAGAAAATGTAGTTTAATTAAACATAAACTGCATCATACCGGGGGGGGAACATTATCACGCAATAAATCAGGGGAACAAGAGAAAGAGGATTCGTTGCCAGTTATTTACGAAAATATTAAAGTTGAAAAACAATTAAATACAGAAGTAATTGCTAAAAAAGAAGAAAGTGTTCCAGAAGTCATCATAAAAGATGAAGATTGTGTTAAAATACAAGAAGTACAGATTAAAGATGAAATATTGGAAGAAAGCAACAGCGATAGCATGGAAGAGATGCCAGATAACAAAAGTGATATTAGTTGGGAACCTGAACCAAATCATGAAAATGGGAACAGATTAAATACAGAAATATTATCAATTAAAGATGAAATATTAGATCCGAGTGTTTTAGAACCACAAATTCAAATTACCGATAAACCTATTGTATCTCCAAAATTAAAAAGAAAAGGTTCAATCAAACATAAACGGACTTGCACGGGAGAAAAATCATTTTTATGTGATATTTGTAGTAAAGGATTTGATAGCCGAAGTCATTTAAAAGAACATAGCAGGACTCATACGGGGGAGAAACCTTATTTATGTGATATTTGTAGCAAGTCATTTACCCACGGGAGTAGTTTAGTTAAACATAAAAGATCGCACACGGGAGAGAGGCCATTTTTATGTGATATGTGTAATAAAACATTTAATTGTAAAAGTAGTTTGGTTCAACATAAACGGATCCATACCGGAGAAAAACCGTATTTATGTGATATTTGTTGTAAATCTTTTAACCATCAAAGTCATTTAGTTGAACATAAACGGACTCACAGCGGAGAAAAACCATTTTTATGTGATATTTGTAGCAAATCATTTACCCACGGTAGCTCTTTAGCTAAACATAAAATGATTCACAGTGGAAAAAAACCATTTTCCTGTGATACTTGTAATAAAACATTTGTTTTTAGCAGGCAATTAGTTGAACATAAACGGAGTCACACTGGTGAAAAACCTTATTCGTGTGATATCTGTAATCAAAAGTTTAATAGGCAAAATAGTTTAAATACACATAAACGTCTCCATACTGGTGAAAAACCATTTGCATGTGAGACTTGTAGCAGAACATTTAATAAGAAAAGTAATTTAAATAAACATAAATTGATTCACAGCGGTATAAAACCATTTTCATGTGACATTTGTAGTAAATCATTTTCAGATAAAAGTAATTTAAGTAAACATAAACGGGGTCACATTAAGACTGAGGTCACACGAGCTCAATCGATTTTAACTCACGTTTTTTCAACAGCACGTTTGTTAGACATGCATAATGAATAA
Protein Sequence
MAKNSFDEVEIKNEILEVDAMQDGRIKNEIQEDSVKMEEILENSSDFKHEENNENDTINNENVKLETDLNTEVIIKNELLSIDNEDQQPIQHKRTHTGEKTFSCNICDKTFSRHWSLVQHKRLHTGEKPYVCDVCNKTFNNKSNLVEHKYSHTEENSFSCDKCDKTFNRQNSLIKHKMIHSGDKPFSCDICNKTFNRNWSLMQHMRIHTGEKPFVCDICDKKFVNRTHLIEHKRTHTGEKPFLCDMCNATFHRKSILVKHKMSHTGEKPFSCDVCEKTFNRHWSLLEHKRIHTGEKPYLCDICSKSFINKSHLVGHKRTHSKEKSFSCDVCNKTFTLSRQLVEHKRMHTGEKLFSCDICTKSFSRRNGLDVHKRLHSGEKPFLCDICSRSFNQLRHLVDHKRTHTGEKPFSCDMCDKRFNRKCSLIKHKLHHTGGGTLSRNKSGEQEKEDSLPVIYENIKVEKQLNTEVIAKKEESVPEVIIKDEDCVKIQEVQIKDEILEESNSDSMEEMPDNKSDISWEPEPNHENGNRLNTEILSIKDEILDPSVLEPQIQITDKPIVSPKLKRKGSIKHKRTCTGEKSFLCDICSKGFDSRSHLKEHSRTHTGEKPYLCDICSKSFTHGSSLVKHKRSHTGERPFLCDMCNKTFNCKSSLVQHKRIHTGEKPYLCDICCKSFNHQSHLVEHKRTHSGEKPFLCDICSKSFTHGSSLAKHKMIHSGKKPFSCDTCNKTFVFSRQLVEHKRSHTGEKPYSCDICNQKFNRQNSLNTHKRLHTGEKPFACETCSRTFNKKSNLNKHKLIHSGIKPFSCDICSKSFSDKSNLSKHKRGHIKTEVTRAQSILTHVFSTARLLDMHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00332715;
90% Identity
-
80% Identity
-